SMTL ID : 6gnq.2 (1 other biounit)

Monoclinic crystalline form of human insulin, complexed with meta-cresol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-6-6-mer

Ligands

6 x CRS: M-CRESOL(Non-covalent)

CRS.1: 10 residues within 4Å: Chain A: C.6, S.9, I.10, C.11 Chain B: C.7, H.10, L.11, A.14 Chain F: L.17 Chain L: H.5 7 PLIP interactions: 1 interactions with chain F, 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: F:L.17, B:H.10, B:L.11, B:L.11, B:A.14 Hydrogen bonds: A:C.11, A:C.11 CRS.4: 8 residues within 4Å: Chain C: C.6, S.9, I.10, C.11, L.16 Chain D: L.11 Chain F: H.5 Chain L: L.17 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 3 interactions with chain C Hydrophobic interactions: D:L.11, L:L.17, C:L.16 Hydrogen bonds: C:S.9, C:C.11 CRS.8: 9 residues within 4Å: Chain B: L.17 Chain E: C.6, S.9, I.10, C.11, L.16 Chain F: L.11, A.14 Chain H: H.5 5 PLIP interactions: 2 interactions with chain F, 2 interactions with chain E, 1 interactions with chain B Hydrophobic interactions: F:L.11, F:A.14, E:L.16, B:L.17 Hydrogen bonds: E:C.11 CRS.11: 9 residues within 4Å: Chain D: H.5 Chain G: C.6, S.9, I.10, C.11, L.16 Chain H: L.11, A.14 Chain J: L.17 7 PLIP interactions: 3 interactions with chain G, 1 interactions with chain J, 2 interactions with chain H, 1 interactions with chain D Hydrophobic interactions: G:L.16, J:L.17, H:L.11, H:A.14 Hydrogen bonds: G:C.11, G:C.11 pi-Stacking: D:H.5 CRS.13: 10 residues within 4Å: Chain B: H.5 Chain H: L.17 Chain I: C.6, S.9, I.10, C.11 Chain J: C.7, H.10, L.11, A.14 5 PLIP interactions: 2 interactions with chain J, 1 interactions with chain B, 1 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: J:L.11, J:A.14, H:L.17 pi-Stacking: B:H.5 Hydrogen bonds: I:C.11 CRS.14: 10 residues within 4Å: Chain D: L.17 Chain J: H.5, L.6 Chain K: C.6, S.9, I.10, C.11 Chain L: H.10, L.11, A.14 8 PLIP interactions: 3 interactions with chain L, 1 interactions with chain D, 2 interactions with chain J, 2 interactions with chain K Hydrophobic interactions: L:H.10, L:L.11, L:A.14, D:L.17, J:L.6 pi-Stacking: J:H.5 Hydrogen bonds: K:C.6, K:C.11

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: H.10 Chain J: H.10 Chain L: H.10 Ligands: IS8.3 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain J, 1 interactions with chain L Metal complexes: B:H.10, J:H.10, L:H.10 ZN.5: 4 residues within 4Å: Chain D: H.10 Chain F: H.10 Chain H: H.10 Ligands: IS8.7 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D, 1 interactions with chain F Metal complexes: H:H.10, D:H.10, F:H.10

2 x IS8: isothiocyanate(Non-covalent)

IS8.3: 7 residues within 4Å: Chain B: L.6, H.10 Chain J: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.2 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain B Water bridges: J:N.3, B:N.3 IS8.7: 7 residues within 4Å: Chain D: L.6, H.10 Chain F: L.6, H.10 Chain H: H.10 Ligands: ZN.5, EDO.12 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain D: S.9, H.10, E.13 Chain H: H.10 Chain J: E.13 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Water bridges: F:S.9 Hydrogen bonds: D:S.9 EDO.9: 4 residues within 4Å: Chain E: E.17, N.18, C.20 Chain F: R.22 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:E.17, E:N.18, F:R.22 EDO.10: 3 residues within 4Å: Chain F: H.10 Chain H: H.5, S.9 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain F Hydrogen bonds: H:H.5, H:S.9 Water bridges: F:S.9, F:H.10 EDO.12: 6 residues within 4Å: Chain D: N.3, L.6 Chain G: C.7 Chain H: N.3, C.7 Ligands: IS8.7 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain D Hydrogen bonds: G:C.7, D:N.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Margiolaki, I. et al., Monoclinic crystalline form of human insulin, complexed with meta-cresol. To Be Published

Release Date

2019-06-12

Peptides

Insulin: ACEGIK
Insulin: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

C
O

E
Q

G
S

I
U

K
W

B
N

D
P

F
R

H
T

J
V

L
X

Insulin

Insulin

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