SMTL ID : 1xw7.4 (3 other biounits)

Diabetes-Associated Mutations in Human Insulin: Crystal Structure and Photo-Cross-Linking Studies of A-Chain Variant Insulin Wakayama

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-6-6-mer

Ligands

6 x IPH: PHENOL(Non-covalent)

IPH.1: 6 residues within 4Å: Chain A: C.6, I.10, C.11 Chain B: H.10, L.11, A.14 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:H.10, B:L.11, B:L.11, B:A.14 Hydrogen bonds: A:C.6, A:C.11 IPH.4: 6 residues within 4Å: Chain C: C.6, I.10, C.11 Chain D: H.10, L.11, A.14 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:H.10, D:L.11, D:A.14 Hydrogen bonds: C:C.11 IPH.7: 6 residues within 4Å: Chain E: C.6, I.10, C.11 Chain F: H.10, L.11, A.14 6 PLIP interactions: 2 interactions with chain E, 4 interactions with chain F Hydrogen bonds: E:C.6, E:C.11 Hydrophobic interactions: F:H.10, F:L.11, F:L.11, F:A.14 IPH.10: 6 residues within 4Å: Chain G: C.6, I.10, C.11 Chain H: H.10, L.11, A.14 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:H.10, H:L.11, H:A.14 Hydrogen bonds: G:C.11 IPH.13: 6 residues within 4Å: Chain I: C.6, I.10, C.11 Chain J: H.10, L.11, A.14 6 PLIP interactions: 4 interactions with chain J, 2 interactions with chain I Hydrophobic interactions: J:H.10, J:L.11, J:L.11, J:A.14 Hydrogen bonds: I:C.6, I:C.11 IPH.16: 6 residues within 4Å: Chain K: C.6, I.10, C.11 Chain L: H.10, L.11, A.14 4 PLIP interactions: 1 interactions with chain K, 3 interactions with chain L Hydrogen bonds: K:C.11 Hydrophobic interactions: L:H.10, L:L.11, L:A.14

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain B: H.10 Ligands: CL.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.10 ZN.5: 2 residues within 4Å: Chain D: H.10 Ligands: CL.6 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.10 ZN.8: 2 residues within 4Å: Chain F: H.10 Ligands: CL.9 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.10 ZN.11: 2 residues within 4Å: Chain H: H.10 Ligands: CL.12 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:H.10 ZN.14: 2 residues within 4Å: Chain J: H.10 Ligands: CL.15 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:H.10 ZN.17: 2 residues within 4Å: Chain L: H.10 Ligands: CL.18 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:H.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain B: L.6, H.10 Ligands: ZN.2 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain D: L.6, H.10 Ligands: ZN.5 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain F: L.6, H.10 Ligands: ZN.8 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain H: L.6, H.10 Ligands: ZN.11 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain J: L.6, H.10 Ligands: ZN.14 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain L: L.6, H.10 Ligands: ZN.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wan, Z.L. et al., Diabetes-associated mutations in human insulin: crystal structure and photo-cross-linking studies of a-chain variant insulin wakayama. Biochemistry (2005)

Release Date

2005-04-12

Peptides

Insulin: ACEGIK
Insulin: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

B
B

D
D

F
B

H
D

J
B

L
D

Insulin

Insulin

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