SMTL ID : 1sys.1

Crystal structure of HLA, B*4403, and peptide EEPTVIKKY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- GLU- PRO- THR- VAL- ILE- LYS- LYS- TYR: Sorting nexin 5(Non-covalent)

GLU-GLU-PRO-THR-VAL-ILE-LYS-LYS-TYR.1: 33 residues within 4Å: Chain A: M.5, Y.7, Y.9, T.24, K.45, Y.59, R.62, E.63, I.66, S.67, T.73, Y.74, E.76, N.77, T.80, Y.84, I.95, R.97, Y.99, D.114, D.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, L.163, S.167, R.170, Y.171 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:N.77, A:T.80, A:I.95, A:Y.123, A:W.147, A:W.147, A:V.152, A:Q.155, A:L.156, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.7, A:E.63, A:E.76, A:N.77, A:N.77, A:Y.99, A:D.114, A:D.116, A:D.116, A:T.143, A:Y.159, A:S.167, A:Y.171 Water bridges: A:R.62, A:R.62, A:R.62, A:N.70, A:N.70, A:T.80 Salt bridges: A:K.45, A:R.62, A:K.146, A:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zernich, D. et al., Natural HLA class I polymorphism controls the pathway of antigen presentation and susceptibility to viral evasion. J.Exp.Med. (2004)

Release Date

2004-10-19

Peptides

leukocyte antigen (HLA) class I molecule: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

leukocyte antigen (HLA) class I molecule

Beta-2-microglobulin

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