SMTL ID : 1tt6.1

The orthorhombic crystal structure of transthyretin in complex with diethylstilbestrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.70, E.72, H.90, E.92 Chain B: K.35, W.41 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:W.41 Water bridges: B:K.70, B:K.70, A:K.70, A:E.72, A:E.72 Salt bridges: B:K.35, B:K.70, A:K.70, A:H.90 SO4.5: 6 residues within 4Å: Chain C: K.70, E.72, H.90, E.92 Chain D: K.35, W.41 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:W.41 Water bridges: D:K.70, D:K.70, C:K.70, C:E.72, C:E.72 Salt bridges: D:K.35, D:K.70, C:K.70, C:H.90

4 x DES: DIETHYLSTILBESTROL(Non-covalent)

DES.2: 13 residues within 4Å: Chain A: K.15, L.17, A.109, L.110, S.117 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: DES.6 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.17, C:T.119, A:L.17, A:L.110 Hydrogen bonds: C:K.15, C:S.117, A:K.15, A:S.117 DES.4: 13 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117 Chain D: K.15, L.17, A.108, A.109, L.110, S.117 Ligands: DES.8 12 PLIP interactions: 6 interactions with chain D, 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: D:L.17, D:L.17, D:A.108, D:L.110, B:A.108, B:L.110, B:L.110 Hydrogen bonds: D:K.15, D:S.117, B:K.15, B:S.117, C:S.117 DES.6: 13 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain C: K.15, L.17, A.109, L.110, S.117 Ligands: DES.2 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.17, C:L.110, A:L.17, A:T.119 Hydrogen bonds: C:K.15, C:S.117, A:K.15, A:S.117 DES.8: 13 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117 Chain D: K.15, L.17, A.108, A.109, L.110, S.117 Ligands: DES.4 12 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: D:A.108, D:L.110, D:L.110, B:L.17, B:L.17, B:A.108, B:L.110 Hydrogen bonds: D:K.15, D:S.117, A:S.117, B:K.15, B:S.117

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: A.19, L.110, S.112, S.115, Y.116, S.117 Chain D: L.110, L.111, S.112, S.115, S.117 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:L.110, D:S.112, D:S.112, D:S.115, A:S.117 GOL.7: 11 residues within 4Å: Chain B: L.110, L.111, S.112, S.115, S.117 Chain C: A.19, L.110, S.112, S.115, Y.116, S.117 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:S.117, B:L.110, B:S.112, B:S.112, B:S.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morais-de-Sa, E. et al., The crystal structure of transthyretin in complex with diethylstilbestrol: a promising template for the design of amyloid inhibitors. J.Biol.Chem. (2004)

Release Date

2004-10-12

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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