SMTL ID : 1uxw.1

CRYSTAL STRUCTURE OF HLA-B*2709 COMPLEXED WITH THE LATENT MEMBRANE PROTEIN 2 PEPTIDE (LMP2) OF EPSTEIN-BARR VIRUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ARG- ARG- TRP- ARG- ARG- LEU- THR- VAL: GENE TERMINAL PROTEIN (MEMBRANE PROTEIN LMP-2A/LMP-2B)(Non-covalent)

ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1: 31 residues within 4Å: Chain A: Y.7, H.9, T.24, E.45, Y.59, R.62, E.63, Q.65, I.66, C.67, A.69, Q.72, T.73, D.77, T.80, Y.84, Y.99, H.114, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, E.163, W.167, Y.171 Ligands: GOL.3, GOL.5, GOL.6 42 PLIP interactions: 42 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.59, A:I.66, A:I.66, A:T.73, A:D.77, A:T.80, A:T.143, A:W.147, A:V.152, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:T.24, A:T.24, A:T.24, A:R.62, A:E.63, A:Q.72, A:T.73, A:D.77, A:Y.99, A:Y.99, A:T.143, A:K.146, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:R.62, A:T.73, A:T.80, A:K.146, A:Q.155, A:Q.155, A:Q.155, A:Q.155, A:E.163 Salt bridges: A:E.45, A:E.63, A:K.146, A:E.163

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: R.6, F.8, Y.27, D.29, D.30 Chain B: Y.64 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.30, B:Y.64 GOL.3: 7 residues within 4Å: Chain A: K.70, N.97, Y.99, H.114, L.156 Ligands: ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1, ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.70, A:K.70 Water bridges: A:T.73, A:T.73 GOL.4: 4 residues within 4Å: Chain A: E.212, I.213, T.233, K.243 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.212, A:I.213, A:I.213 Water bridges: A:T.233, A:T.233, A:K.243, A:K.243, A:K.243 GOL.5: 7 residues within 4Å: Chain A: K.146, W.147, A.150, V.152, Q.155 Ligands: ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1, ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.146, A:K.146, A:Q.155 GOL.6: 4 residues within 4Å: Chain A: Q.65, A.69 Ligands: ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1, ARG-ARG-ARG-TRP-ARG-ARG-LEU-THR-VAL.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.65, A:A.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorillo, M.T. et al., Allele-Dependent Similarity between Viral and Self-Peptide Presentation by Hla-B27 Subtypes. J.Biol.Chem. (2005)

Release Date

2004-11-09

Peptides

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-27 ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-27 ALPHA CHAIN

BETA-2-MICROGLOBULIN

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