SMTL ID : 8dms.1 (1 other biounit)

Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 8 residues within 4Å: Chain A: W.321, G.336 Chain B: D.39, Q.40, R.42, Q.49, V.70, R.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.42, B:R.72

1 x GVE: METHYL 4-AMINOBUTANOATE(Covalent)

GVE.2: 3 residues within 4Å: Chain A: E.71, C.190 Chain B: G.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Legionella metaeffector MavL reverses ubiquitin ADP-ribosylation via a conserved arginine-specific macrodomain. Nat Commun (2024)

Release Date

2023-07-12

Peptides

MavL: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

MavL

Ubiquitin

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