SMTL ID : 8dmq.2 (1 other biounit)

Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 3 residues within 4Å: Chain A: K.213, H.214, S.217 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.213, A:H.214, A:S.217 Salt bridges: A:K.213, A:H.214

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: P.219, Y.220 No protein-ligand interaction detected (PLIP)

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 7 residues within 4Å: Chain A: W.321, G.336 Chain B: D.39, Q.40, R.42, V.70, R.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.42, B:R.72, B:R.72

1 x GVE: METHYL 4-AMINOBUTANOATE(Covalent)

GVE.4: 3 residues within 4Å: Chain A: E.71, C.190 Chain B: G.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.71, A:E.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structure of Legionella pneumophila macrodomain effector MavL in complex with ubiquitin vinyl methyl ester. To Be Published

Release Date

2023-07-12

Peptides

MavL: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

MavL

Ubiquitin

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