SMTL ID : 8adb.1

Viral tegument-like DUBs

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: G.31, K.32, S.33, A.34, Y.70, K.74 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.32, A:S.33, A:S.33, A:Y.70, A:K.74 Salt bridges: A:K.32, A:K.74, A:K.74

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.2: 13 residues within 4Å: Chain A: L.27, D.28, N.29, A.30, K.32, S.33, C.35, T.36, N.145, M.146, T.147 Chain B: R.74, G.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.146 Water bridges: A:T.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erven, I. et al., A widely distributed family of eukaryotic and bacterial deubiquitinases related to herpesviral large tegument proteins. Nat Commun (2022)

Release Date

2023-02-15

Peptides

Wc-VDT1: A
Polyubiquitin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Wc-VDT1

Polyubiquitin-C

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