SMTL ID : 5cra.2 (1 other biounit)

Structure of the SdeA DUB Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.34, G.57, P.58, H.59, R.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.59, A:R.60 Salt bridges: A:H.59, A:R.60 SO4.2: 3 residues within 4Å: Chain A: H.16, A.20, R.21 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.16, A:R.21 SO4.3: 5 residues within 4Å: Chain A: L.82, G.112, L.113, N.114, M.115 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.112, A:L.113, A:N.114, A:N.114, A:M.115

1 x GVE: METHYL 4-AMINOBUTANOATE(Covalent)

GVE.4: 8 residues within 4Å: Chain A: E.9, G.63, H.64, N.114, G.116, L.117, C.118 Chain B: G.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.9, A:N.114 Salt bridges: A:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheedlo, M.J. et al., Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-11-25

Peptides

SdeA: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

SdeA

Polyubiquitin-B

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