SMTL ID : 7jms.1 (3 other biounits)

Structure of the Hazara virus OTU bound to ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: N.20, V.128 Chain B: T.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:T.9, A:V.128 CA.2: 3 residues within 4Å: Chain A: Q.34, E.47, S.54 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.47, H2O.1 CA.3: 1 residues within 4Å: Chain A: E.64 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.64, H2O.1, H2O.1

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.4: 8 residues within 4Å: Chain A: P.35, A.36, D.37, G.38, C.40, T.150, H.151 Chain B: G.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.150, A:F.152

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain B: S.57, N.60, Q.62 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.60, B:Q.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dzimianski, J.V. et al., Flipping the substrate preference of Hazara virus ovarian tumour domain protease through structure-based mutagenesis. Acta Crystallogr D Struct Biol (2020)

Release Date

2020-10-21

Peptides

Replicase: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Replicase

Polyubiquitin-B

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