SMTL ID : 3pt2.1 (1 other biounit)

Structure of a viral OTU domain protease bound to Ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: M.53, N.55, T.57, S.60 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.57, A:T.57 SO4.4: 2 residues within 4Å: Chain B: K.48, R.54 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.48, B:R.54 SO4.5: 4 residues within 4Å: Chain A: L.84, V.85 Chain B: R.72, R.74 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.72, B:R.74

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: T.52 No protein-ligand interaction detected (PLIP)

1 x 4LJ: 1.7.6 3-bromanylpropan-1-amine(Covalent)

4LJ.3: 7 residues within 4Å: Chain A: D.40, G.41, C.43, W.102, T.153, H.154 Chain B: G.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, T.W. et al., Structural basis for the removal of ubiquitin and interferon-stimulated gene 15 by a viral ovarian tumor domain-containing protease. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-01-19

Peptides

RNA polymerase: A
Ubiquitin B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA polymerase

Ubiquitin B

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