SMTL ID : 8eho.1 (2 other biounits)

PRRSV-1 PLP2 domain bound to ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.101, C.132, C.137, C.141 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.101, A:C.132, A:C.137, A:C.141

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: I.86, Q.87, Q.90, L.91, S.127, L.128, V.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.86, A:L.128 GOL.3: 4 residues within 4Å: Chain A: S.38, P.39, H.114, E.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.38, A:S.38, A:E.116

1 x 3CN: 3-AMINOPROPANE(Covalent)

3CN.4: 6 residues within 4Å: Chain A: G.43, C.45, W.76, V.113, H.114 Chain B: G.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.113

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.5: 3 residues within 4Å: Chain B: A.28, Q.31, D.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.28, B:Q.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey-Elkin, B.A. et al., Demonstrating the importance of porcine reproductive and respiratory syndrome virus papain-like protease 2 deubiquitinating activity in viral replication by structure-guided mutagenesis. Plos Pathog. (2023)

Release Date

2023-12-06

Peptides

Papain-like protease 2: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Papain-like protease 2

Ubiquitin

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