SMTL ID : 1zeg.3 (8 other biounits)

STRUCTURE OF B28 ASP INSULIN IN COMPLEX WITH PHENOL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-6-6-mer

Ligands

9 x IPH: PHENOL(Non-covalent)

IPH.1: 9 residues within 4Å: Chain A: C.6, S.9, I.10, C.11 Chain B: C.7, H.10, L.11, A.14 Chain F: H.5 6 PLIP interactions: 2 interactions with chain A, 1 interactions with chain F, 3 interactions with chain B Hydrogen bonds: A:C.6, A:C.11 pi-Stacking: F:H.5 Hydrophobic interactions: B:H.10, B:L.11, B:A.14 IPH.4: 10 residues within 4Å: Chain B: E.13, Y.16, L.17 Chain D: H.5, S.9 Chain H: H.10, E.13, A.14, L.17 Ligands: IPH.12 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain B Hydrophobic interactions: H:E.13, H:E.13, H:A.14, B:Y.16, B:L.17 Hydrogen bonds: H:H.10 IPH.5: 7 residues within 4Å: Chain C: C.6, S.9, I.10, C.11 Chain D: L.11 Chain L: H.5 Ligands: IPH.18 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:L.11 Hydrogen bonds: C:C.11 IPH.8: 9 residues within 4Å: Chain E: C.6, S.9, I.10, C.11 Chain F: C.7, H.10, L.11, A.14 Chain J: H.5 6 PLIP interactions: 3 interactions with chain F, 2 interactions with chain E, 1 interactions with chain J Hydrophobic interactions: F:H.10, F:L.11, F:A.14 Hydrogen bonds: E:C.6, E:C.11 pi-Stacking: J:H.5 IPH.11: 10 residues within 4Å: Chain F: E.13, Y.16, L.17 Chain H: H.5, S.9 Chain L: H.10, E.13, A.14, L.17 Ligands: IPH.19 6 PLIP interactions: 4 interactions with chain L, 2 interactions with chain F Hydrophobic interactions: L:E.13, L:E.13, L:A.14, F:Y.16, F:L.17 Hydrogen bonds: L:H.10 IPH.12: 7 residues within 4Å: Chain D: H.5 Chain G: C.6, S.9, I.10, C.11 Chain H: L.11 Ligands: IPH.4 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: H:L.11 Hydrogen bonds: G:C.11 IPH.15: 9 residues within 4Å: Chain B: H.5 Chain I: C.6, S.9, I.10, C.11 Chain J: C.7, H.10, L.11, A.14 6 PLIP interactions: 3 interactions with chain J, 2 interactions with chain I, 1 interactions with chain B Hydrophobic interactions: J:H.10, J:L.11, J:A.14 Hydrogen bonds: I:C.6, I:C.11 pi-Stacking: B:H.5 IPH.18: 10 residues within 4Å: Chain D: H.10, E.13, A.14, L.17 Chain J: E.13, Y.16, L.17 Chain L: H.5, S.9 Ligands: IPH.5 6 PLIP interactions: 2 interactions with chain J, 4 interactions with chain D Hydrophobic interactions: J:Y.16, J:L.17, D:E.13, D:E.13, D:A.14 Hydrogen bonds: D:H.10 IPH.19: 7 residues within 4Å: Chain H: H.5 Chain K: C.6, S.9, I.10, C.11 Chain L: L.11 Ligands: IPH.11 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:L.11 Hydrogen bonds: K:C.11

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.3, ZN.9, CL.10, ZN.16, CL.17 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.6: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.7, ZN.13, CL.14, ZN.20, CL.21 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.10, D:H.10, H:H.10 ZN.9: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, CL.10, ZN.16, CL.17 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain J Metal complexes: B:H.10, F:H.10, J:H.10 ZN.13: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.6, CL.7, CL.14, ZN.20, CL.21 3 PLIP interactions: 1 interactions with chain L, 1 interactions with chain D, 1 interactions with chain H Metal complexes: L:H.10, D:H.10, H:H.10 ZN.16: 8 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: ZN.2, CL.3, ZN.9, CL.10, CL.17 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain J, 1 interactions with chain B Metal complexes: F:H.10, J:H.10, B:H.10 ZN.20: 8 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: ZN.6, CL.7, ZN.13, CL.14, CL.21 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 1 interactions with chain L Metal complexes: D:H.10, H:H.10, L:H.10

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 11 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2, ZN.9, CL.10, ZN.16, CL.17 Ligand excluded by PLIP CL.7: 11 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.6, ZN.13, CL.14, ZN.20, CL.21 Ligand excluded by PLIP CL.10: 11 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2, CL.3, ZN.9, ZN.16, CL.17 Ligand excluded by PLIP CL.14: 11 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.6, CL.7, ZN.13, ZN.20, CL.21 Ligand excluded by PLIP CL.17: 11 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: L.6, H.10 Ligands: ZN.2, CL.3, ZN.9, CL.10, ZN.16 Ligand excluded by PLIP CL.21: 11 residues within 4Å: Chain D: L.6, H.10 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.6, CL.7, ZN.13, CL.14, ZN.20 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittingham, J.L. et al., Interactions of phenol and m-cresol in the insulin hexamer, and their effect on the association properties of B28 pro --> Asp insulin analogues. Biochemistry (1998)

Release Date

1998-07-15

Peptides

INSULIN: ACEGIK
INSULIN: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

I
A

K
C

B
B

D
D

F
B

H
D

J
B

L
D

INSULIN

INSULIN

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