SMTL ID : 3rov.1 (3 other biounits)

Insulin's biosynthesis and activity have opposing structural requirements: a new factor in neonatal diabetes mellitus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-6-6-mer

Ligands

6 x IPH: PHENOL(Non-covalent)

IPH.1: 8 residues within 4Å: Chain A: C.6, S.9, I.10, C.11, L.16 Chain B: H.10, A.14 Chain F: H.5 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 1 interactions with chain F Hydrophobic interactions: A:L.16, B:A.14 Hydrogen bonds: A:S.9, A:C.11 pi-Stacking: F:H.5 IPH.4: 8 residues within 4Å: Chain C: C.6, S.9, I.10, C.11 Chain D: C.7, H.10, L.11 Chain L: H.5 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain L, 2 interactions with chain C Hydrophobic interactions: D:H.10, D:L.11 pi-Stacking: L:H.5 Hydrogen bonds: C:C.6, C:C.11 IPH.6: 9 residues within 4Å: Chain E: C.6, S.9, I.10, C.11 Chain F: C.7, H.10, L.11, A.14 Chain J: L.6 5 PLIP interactions: 2 interactions with chain F, 2 interactions with chain E, 1 interactions with chain J Hydrophobic interactions: F:H.10, F:A.14, J:L.6 Hydrogen bonds: E:C.6, E:C.11 IPH.7: 9 residues within 4Å: Chain B: L.17 Chain D: H.5 Chain G: C.6, I.10, C.11, L.16 Chain H: H.10, L.11, A.14 8 PLIP interactions: 1 interactions with chain D, 3 interactions with chain G, 3 interactions with chain H, 1 interactions with chain B pi-Stacking: D:H.5 Hydrophobic interactions: G:L.16, H:H.10, H:L.11, H:A.14, B:L.17 Hydrogen bonds: G:C.6, G:C.11 IPH.9: 10 residues within 4Å: Chain B: H.5, L.6 Chain I: C.6, S.9, I.10, C.11, L.16 Chain J: C.7, H.10, L.11 7 PLIP interactions: 2 interactions with chain B, 2 interactions with chain J, 3 interactions with chain I Hydrophobic interactions: B:L.6, J:H.10, J:L.11, I:L.16 pi-Stacking: B:H.5 Hydrogen bonds: I:C.6, I:C.11 IPH.10: 8 residues within 4Å: Chain H: H.5 Chain K: C.6, S.9, I.10, C.11 Chain L: H.10, L.11, A.14 5 PLIP interactions: 2 interactions with chain K, 2 interactions with chain L, 1 interactions with chain H Hydrogen bonds: K:C.6, K:C.11 Hydrophobic interactions: L:L.11, L:A.14 pi-Stacking: H:H.5

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: H.10 Chain F: H.10 Chain J: H.10 Ligands: CL.3 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain J, 1 interactions with chain F Metal complexes: B:H.10, J:H.10, F:H.10 ZN.5: 4 residues within 4Å: Chain D: H.10 Chain H: H.10 Chain L: H.10 Ligands: CL.8 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain L, 1 interactions with chain D Metal complexes: H:H.10, L:H.10, D:H.10

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain B: L.6, H.10 Chain F: L.6, H.10 Chain J: H.10 Ligands: ZN.2 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain D: L.6 Chain H: L.6, H.10 Chain L: L.6, H.10 Ligands: ZN.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weiss, M.A. et al., Insulin's biosynthesis and activity have opposing structural requirements: a new factor in neonatal diabetes mellitus. To be Published

Release Date

2012-05-02

Peptides

Insulin: ACEGIK
Insulin: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Insulin

Insulin

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