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SMTL ID : 2a83.1

Crystal structure of hla-b*2705 complexed with the glucagon receptor (gr) peptide (residues 412-420)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ARG- ARG- TRP- HIS- ARG- TRP- ARG- LEU: THE GLUCAGON RECEPTOR (GR) PEPTIDE(Non-covalent)

ARG-ARG-ARG-TRP-HIS-ARG-TRP-ARG-LEU.1:

28 residues within 4Å:

Chain A: Y.7, H.9, T.24, E.45, Y.59, R.62, E.63, Q.65, I.66, C.67, K.70, T.73, E.76, D.77, T.80, L.81, Y.84, Y.99, H.114, T.143, K.146, W.147, V.152, L.156, Y.159, E.163, W.167, Y.171

40 PLIP interactions:

40 interactions with chain A

Hydrophobic interactions: A:Y.7, A:Y.59, A:Q.65, A:I.66, A:I.66, A:K.70, A:D.77, A:L.81, A:Y.99, A:T.143, A:W.147, A:V.152, A:L.156, A:Y.159, A:Y.159, A:W.167
Hydrogen bonds: A:T.24, A:T.24, A:R.62, A:R.62, A:E.63, A:K.70, A:D.77, A:Y.84, A:Y.99, A:Y.99, A:H.114, A:H.114, A:Y.171, A:Y.171
Water bridges: A:R.62, A:D.77, A:D.77, A:W.147
Salt bridges: A:E.45, A:E.63, A:E.76, A:K.146, A:E.163
pi-Cation interactions: A:K.70

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	7 residues within 4Å: Chain A: L.179, Q.180, R.181, A.182, Y.209, P.210, E.264 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.180 Water bridges: A:G.1, A:G.1, A:S.2, A:S.2, A:D.29, A:L.179, A:Y.209, A:E.264
GOL.3:	6 residues within 4Å: Chain A: R.6, F.8, Y.27, D.29, D.30 Chain B: Y.64 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.64, B:Y.64, A:D.30, A:D.30
GOL.4:	3 residues within 4Å: Chain A: E.166, W.167, R.170 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.166, A:E.166, A:R.170 Water bridges: A:R.170
GOL.5:	7 residues within 4Å: Chain A: K.186, G.207, A.236, D.238, T.240 Chain B: R.13, H.14 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:R.13, A:K.186, A:K.186 Water bridges: A:K.186, A:T.240, A:Q.242, A:Q.242
GOL.7:	11 residues within 4Å: Chain A: W.204, L.206, R.234, Q.242 Chain B: Y.11, S.12, R.13, H.14, P.15, R.98, M.100 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.234, A:Q.242, B:S.12, B:R.98 Water bridges: A:Q.242, B:S.12
GOL.8:	5 residues within 4Å: Chain B: D.77, E.78, W.96, D.97, R.98 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.77, B:D.97, B:D.97, B:R.98, B:R.98 Water bridges: B:E.75

1 x NA: SODIUM ION(Non-functional Binders)

NA.6:

4 residues within 4Å:

Chain A: V.12
Chain B: P.33, S.34, D.35

3 PLIP interactions:

3 interactions with chain B

Hydrogen bonds: B:S.34, B:D.35, B:D.35

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ruckert, C. et al., Conformational dimorphism of self-peptides and molecular mimicry in a disease-associated HLA-B27 subtype. J.Biol.Chem. (2006)

Release Date

2005-12-27

Peptides

HLA class I histocompatibility antigen, B-27 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HLA class I histocompatibility antigen, B-27 alpha chain

Beta-2-microglobulin

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1i1f.1 | 1i1f.2 | 1i1y.1 | 1i1y.2 | 1i4f.1 | 1i7r.1 | 1i7r.2 | 1i7t.1 | 1i7t.2 | 1i7u.1 | 1i7u.2 | 1im3.1 | 1im3.2 | 1im3.3 | 1im3.4 | 1im9.1 | 1jf1.1 | 1jgd.1 | 1jge.1 | 1jht.1 | 1jnj.1 | 1k5n.1 | 1kpr.1 | 1kpr.2 | 1kpr.3 | 1kpr.4 | 1ktl.1 | 1ktl.2 | 1ktl.3 | 1lds.1 | 1lp9.1 | 1lp9.2 | 1mhe.1 | 1of2.1 | 1oga.1 | 1ogt.1 | 1q94.1 | 1q94.2 | 1qew.1 | 1qr1.1 | 1qr1.2 | 1qrn.1 | 1qse.1 | 1qsf.1 | 1qvo.1 | 1qvo.2 | 1s9w.1 | 1s9x.1 | 1s9y.1 | 1sys.1 | 1syv.1 | 1tmc.1 | 1tvb.1 | 1tvb.2 | 1tvh.1 | 1tvh.2 | 1uqs.1 | 1uxs.1 | 1uxw.1 | 1w0v.1 | 1w0w.1 | 1w72.1 | 1w72.2 | 1ydp.1 | 1ydp.2 | 1zt4.1 | 1zt4.2 | 1zt4.3 | 2av1.1 | 2av1.2 | 2av7.1 | 2av7.2 | 2bck.1 | 2bck.2 | 2bck.3 | 2bnq.1 | 2bnr.1 | 2bsr.1 | 2bss.1 | 2bst.1 | 2bvo.1 | 2bvp.1 | 2bvq.1 | 2c7u.1 | 2c7u.2 | 2clr.1 | 2clr.2 | 2d31.1 | 2d31.2 | 2d4f.1 | 2dyp.1 | 2esv.1 | 2f74.1 | 2f74.2 | 2git.1 | 2git.2 | 2gj6.1 | 2gt9.1 | 2gt9.2 | 2gtw.1 | 2gtw.2 | 2gtz.1 | 2gtz.2 | 2guo.1 | 2guo.2 | 2j8u.1 | 2j8u.2 | 2jcc.1 | 2jcc.2 | 2uwe.1 | 2uwe.2 | 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6mt4.1 | 6mt5.1 | 6mt6.1 | 6nca.1 | 6nca.2 | 6nca.3 | 6nca.4 | 6nca.5 | 6nca.6 | 6nca.7 | 6nca.8 | 6nca.9 | 6nca.10 | 6nca.11 | 6nca.12 | 6nca.13 | 6nca.14 | 6nca.15 | 6nca.16 | 6nca.17 | 6nca.18 | 6nca.19 | 6nca.20 | 6npr.1 | 6npr.2 | 6opd.1 | 6p2f.1 | 6p2s.1 | 6p64.1 | 6p64.2 | 6pa1.1 | 6pa1.2 | 6pag.1 | 6ptb.1 | 6ptb.2 | 6pte.1 | 6pte.2 | 6pte.3 | 6pte.4 | 6puc.1 | 6puc.2 | 6pud.1 | 6pud.2 | 6pue.1 | 6pue.2 | 6puf.1 | 6puf.2 | 6pug.1 | 6pug.2 | 6puh.1 | 6puh.2 | 6pui.1 | 6pui.2 | 6puj.1 | 6puj.2 | 6puk.1 | 6puk.2 | 6pul.1 | 6pul.2 | 6pum.1 | 6pum.2 | 6pvc.1 | 6pvc.2 | 6pvd.1 | 6pvd.2 | 6pyj.1 | 6pyl.1 | 6pyw.1 | 6q3k.1 | 6q3s.1 | 6r2l.1 | 6rp9.1 | 6rp9.2 | 6rpa.1 | 6rpb.1 | 6rpb.2 | 6rpb.3 | 6rpb.4 | 6rsy.1 | 6rsy.2 | 6ss7.1 | 6ss7.2 | 6ss8.1 | 6ss8.2 | 6ss9.1 | 6ss9.2 | 6ssa.1 | 6ssa.2 | 6ssa.3 | 6ssa.4 | 6tdo.1 | 6tdp.1 | 6tdq.1 | 6tdq.2 | 6tdr.1 | 6tdr.2 | 6tds.1 | 6tds.2 | 6tmo.1 | 6trn.1 | 6tro.1 | 6ujo.1 | 6ujq.1 | 6uk2.1 | 6uk4.1 | 6uli.1 | 6ulk.1 | 6uz1.1 | 6uz1.2 | 6uzm.1 | 6uzn.1 | 6uzo.1 | 6uzp.1 | 6uzq.1 | 6uzs.1 | 6v2o.1 | 6v2p.1 | 6v2q.1 | 6v3j.1 | 6v7y.1 | 6v7z.1 | 6v7z.2 | 6v80.1 | 6v80.2 | 6vb0.1 | 6vb3.1 | 6vb7.1 | 6viu.1 | 6vm7.1 | 6vm8.1 | 6vm9.1 | 6vma.1 | 6vmc.1 | 6vmx.1 | 6vmx.2 | 6vpz.1 | 6vq2.1 | 6vqd.1 | 6vqe.1 | 6vqo.1 | 6vqo.2 | 6vqy.1 | 6vqy.2 | 6vqz.1 | 6vqz.2 | 6vr1.1 | 6vr1.2 | 6vr5.1 | 6vr5.2 | 6vrm.1 | 6vrn.1 | 6w9u.1 | 6w9u.2 | 6w9v.1 | 6w9v.2 | 6x00.1 | 6xqa.1 | 6xqa.2 | 6xqp.1 | 6xqp.2 | 6y26.1 | 6y27.1 | 6y28.1 | 6y29.1 | 6y2a.1 | 6y2b.1 | 6z9v.1 | 6z9v.2 | 6z9w.1 | 6z9w.2 | 6z9x.1 | 6z9x.2 | 6zkw.1 | 6zkx.1 | 6zky.1 | 6zkz.1 | 7alo.1 | 7alo.2 | 7bbg.1 | 7bh8.1 | 7ciq.1 | 7cir.1 | 7cis.1 | 7duu.1 | 7dyn.1 | 7dzm.1 | 7dzn.1 | 7edo.1 | 7jwi.1 | 7jyu.1 | 7jyu.2 | 7jyv.1 | 7jyw.1 | 7jyx.1 | 7jyx.2 | 7k80.1 | 7k80.2 | 7k81.1 | 7l1b.1 | 7l1c.1 | 7l1d.1 | 7lfz.1 | 7lg0.1 | 7lg2.1 | 7lg3.1 | 7lgd.1 | 7lgd.2 | 7lgt.1 | 7lgt.2 | 7lli.1 | 7lli.2 | 7llj.1 | 7llj.2 | 7m8s.1 | 7m8s.2 | 7m8t.1 | 7m8u.1 | 7mj6.1 | 7mj7.1 | 7mj8.1 | 7mj9.1 | 7mja.1 | 7mkb.1 | 7mle.1 | 7n1a.1 | 7n1a.2 | 7n1b.1 | 7n1b.2 | 7n1e.1 | 7n1f.1 | 7n2n.1 | 7n2o.1 | 7n2p.1 | 7n2q.1 | 7n2q.2 | 7n2r.1 | 7n2s.1 | 7n4k.1 | 7n5c.1 | 7n5p.1 | 7n5q.1 | 7n5q.2 | 7n6d.1 | 7n6d.2 | 7n6d.3 | 7n6d.4 | 7n6e.1 | 7n6e.2 | 7n9j.1 | 7na5.1 | 7ndq.1 | 7ndt.1 | 7ndu.1 | 7nmd.1 | 7nmd.2 | 7nme.1 | 7nmf.1 | 7nmg.1 | 7nui.1 | 7ow3.1 | 7ow3.2 | 7ow3.3 | 7ow3.4 | 7ow4.1 | 7ow4.2 | 7ow4.3 | 7ow4.4 | 7ow5.1 | 7ow6.1 | 7p3d.1 | 7p3e.1 | 7p3e.2 | 7p49.1 | 7p49.2 | 7p49.3 | 7p49.4 | 7p4b.1 | 7p4b.2 | 7p4b.3 | 7p4b.4 | 7pb2.1 | 7pb2.2 | 7pbc.1 | 7pbe.1 | 7pbe.2 | 7pdw.1 | 7pdw.2 | 7q98.1 | 7q98.2 | 7q98.3 | 7q98.4 | 7q98.5 | 7q99.1 | 7q9a.1 | 7q9b.1 | 7qng.1 | 7qpj.1 | 7r7v.1 | 7r7w.1 | 7r7x.1 | 7r7x.2 | 7r80.1 | 7re7.1 | 7re7.2 | 7re8.1 | 7re8.2 | 7rk7.1 | 7rm4.1 | 7rm4.2 | 7rm4.3 | 7rm4.4 | 7rrg.1 | 7rtd.1 | 7rtr.1 | 7rzd.1 | 7rzj.1 | 7s79.1 | 7s7d.1 | 7s7e.1 | 7s7f.1 | 7s8a.1 | 7s8e.1 | 7s8f.1 | 7s8q.1 | 7s8q.2 | 7s8r.1 | 7s8r.2 | 7s8s.1 | 7sa2.1 | 7sig.1 | 7sis.1 | 7su9.1 | 7tlt.1 | 7tlt.2 | 7tuc.1 | 7tud.1 | 7tue.1 | 7u1r.1 | 7u21.1 | 7u21.2 | 7uc5.1 | 7uc5.2 | 7ufj.1 | 7ufj.2 | 7um2.1 | 7umg.1 | 7ur1.1 | 7zt2.1 | 7zt3.1 | 7zt4.1 | 7zt5.1 | 7zt7.1 | 7zt8.1 | 7zt9.1 | 7zuc.1 | 7zuc.2 | 8cx4.1 | 8dnt.1 | 8dnt.2 | 8dnt.3 | 8dnt.4 | 8e13.1 | 8e2z.1 | 8e8i.1 | 8eb2.1 | 8eb2.2 | 8eb2.3 | 8ek5.1 | 8emf.1 | 8emg.1 | 8emi.1 | 8emj.1 | 8emk.1 | 8en8.1 | 8en8.2 | 8enh.1 | 8enh.2 | 8enh.3 | 8enh.4 | 8eo8.1 | 8eo8.2 | 8eo8.3 | 8eo8.4 | 8es8.1 | 8es9.1 | 8fja.1 | 8fjb.1 | 8fu4.1 | 8gom.1 | 8gon.1 | 8gvb.1 | 8gvg.1 | 8gvi.1 | 8hn4.1 | 8qfy.1 | 8qfy.2 | 8rbu.1 | 8rbv.1 | 8rcv.1 | 8ref.1 | 8rh6.1 | 8rhq.1 | 8rlt.1 | 8rlt.2 | 8rlu.1 | 8rlu.2 | 8rlv.1 | 8rlv.2 | 8rng.1 | 8rnh.1 | 8roo.1 | 8rop.1 | 8rym.1 | 8ryn.1 | 8ryo.1 | 8ryp.1 | 8ryq.1 | 8ryq.2 | 8sbk.1 | 8sbl.1 | 8sbl.2 | 8sbl.3 | 8sbl.4 | 8sgb.1 | 8sgm.1 | 8shi.1 | 8shi.2 | 8sos.1 | 8tbv.1 | 8tbv.2 | 8tbw.1 | 8tbw.2 | 8tuh.1 | 8u9g.1 | 8u9g.2 | 8xke.1 | 8y6x.1 | 8zv9.1 | 8zv9.2 | 8zv9.3

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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Extreme

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