SMTL ID : 2amv.2 (2 other biounits)

THE STRUCTURE OF GLYCOGEN PHOSPHORYLASE B WITH AN ALKYL-DIHYDROPYRIDINE-DICARBOXYLIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 16 residues within 4Å: Chain A: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, E.672, G.675, T.676, G.677, K.680 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.90, A:Y.648, A:K.680 Hydrogen bonds: A:T.676, A:T.676, A:G.677 Water bridges: A:Y.90, A:K.568, A:K.568, A:K.574, A:K.574, A:K.574, A:K.574, A:G.675, A:G.677, A:N.678 Salt bridges: A:K.568, A:K.574

1 x BIN: 2,3-DICARBOXY-4-(2-CHLORO-PHENYL)-1-ETHYL-5-ISOPROPOXYCARBONYL-6-METHYL-PYRIDINIUM(Non-covalent)

BIN.2: 12 residues within 4Å: Chain A: W.67, I.68, Q.71, Q.72, Y.75, R.193, E.195, F.196, D.227, R.242, R.309, R.310 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.71, A:Q.72, A:Y.75, A:F.196, A:F.196 Hydrogen bonds: A:R.81 Water bridges: A:Q.71, A:R.242 Salt bridges: A:R.242, A:R.309, A:R.309, A:R.310, A:R.310

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: L.136, H.377, V.455, N.484, E.672, A.673, S.674, G.675 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.377, A:E.672, A:A.673, A:S.674, A:G.675, A:G.675 Water bridges: A:H.377, A:E.672

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zographos, S.E. et al., The structure of glycogen phosphorylase b with an alkyldihydropyridine-dicarboxylic acid compound, a novel and potent inhibitor. Structure (1997)

Release Date

1998-10-21

Peptides

PROTEIN (GLYCOGEN PHOSPHORYLASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (GLYCOGEN PHOSPHORYLASE)

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