SMTL ID : 2qnb.1

Glycogen Phosphorylase b in complex with N-benzoyl-N'-beta-D-glucopyranosyl urea

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x BZD: N-[(phenylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine(Non-covalent)

BZD.1: 17 residues within 4Å: Chain A: E.88, N.133, G.135, L.136, L.139, N.282, D.283, H.341, H.377, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:D.283 Hydrogen bonds: A:G.135, A:L.136, A:N.484, A:Y.573, A:E.672, A:E.672, A:A.673, A:S.674, A:G.675, A:G.675 Water bridges: A:N.133, A:G.137, A:H.377, A:Y.573, A:Y.573, A:T.676 pi-Cation interactions: A:H.341 BZD.2: 15 residues within 4Å: Chain A: R.60, V.64, W.67, P.188, W.189, E.190, K.191, P.229 Chain B: F.37, T.38, L.39, V.40, H.57, R.60 Ligands: BZD.4 14 PLIP interactions: 9 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:R.60, A:V.64, A:W.67, A:P.229, B:V.40 Hydrogen bonds: A:R.60, A:E.190, A:K.191, B:T.38, B:H.57, B:R.60 Water bridges: A:R.60, A:R.60, B:R.60 BZD.3: 17 residues within 4Å: Chain B: E.88, N.133, G.135, L.136, L.139, N.282, D.283, H.341, H.377, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:D.283 Hydrogen bonds: B:G.135, B:L.136, B:H.377, B:N.484, B:E.672, B:A.673, B:S.674, B:G.675, B:G.675 Water bridges: B:N.133, B:G.137, B:D.283, B:H.377, B:Y.573, B:Y.573, B:Y.573, B:Y.573, B:Y.573, B:Y.573, B:T.676 pi-Cation interactions: B:H.341 BZD.4: 15 residues within 4Å: Chain A: F.37, T.38, L.39, V.40, H.57, R.60 Chain B: R.60, V.64, W.67, P.188, W.189, E.190, K.191, P.229 Ligands: BZD.2 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:V.40, B:R.60, B:V.64, B:W.67, B:P.229 Hydrogen bonds: A:T.38, A:H.57, A:R.60, B:R.60, B:E.190, B:K.191 Water bridges: A:R.60, B:R.60, B:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagy, V. et al., N-(4-substituted-benzoyl)-N'-(beta-D-glucopyranosyl)ureas, inhibitors of glycogen phosphorylase: synthesis, kinetic and crystallographic evaluation. To be Published

Release Date

2008-07-22

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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