- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x KS3: (2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(3-naphthalen-2-yl-1~{H}-1,2,4-triazol-5-yl)oxane-3,4,5-triol(Non-covalent)
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.3: 3 residues within 4Å:- Chain A: R.309, R.310
- Ligands: DMS.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.309, A:R.309
DMS.4: 3 residues within 4Å:- Chain A: Y.75
- Chain B: V.45
- Ligands: DMS.3
1 PLIP interactions:1 interactions with chain A- pi-Cation interactions: A:Y.75
DMS.8: 3 residues within 4Å:- Chain B: R.309, R.310
- Ligands: DMS.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.309, B:R.309
DMS.9: 3 residues within 4Å:- Chain A: V.45
- Chain B: Y.75
- Ligands: DMS.8
1 PLIP interactions:1 interactions with chain B- pi-Cation interactions: B:Y.75
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.5: 15 residues within 4Å:- Chain A: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:Y.90, A:Y.648, A:V.650, A:K.680
- Hydrogen bonds: A:T.676, A:G.677
- Water bridges: A:G.135, A:K.568, A:K.568, A:K.574, A:N.678
- Salt bridges: A:K.568, A:K.574
PLP.10: 15 residues within 4Å:- Chain B: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:Y.90, B:Y.648, B:V.650, B:K.680
- Hydrogen bonds: B:Y.648, B:T.676, B:G.677
- Water bridges: B:G.135, B:K.568, B:K.568, B:K.574, B:N.678
- Salt bridges: B:K.568, B:K.574
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kantsadi, A.L. et al., van der Waals interactions govern C-beta-d-glucopyranosyl triazoles' nM inhibitory potency in human liver glycogen phosphorylase. J. Struct. Biol. (2017)
- Release Date
- 2017-06-14
- Peptides
- Glycogen phosphorylase, muscle form: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
SMTL ID : 5lrf.1
Crystal structure of Glycogen Phosphorylase b in complex with KS389
Glycogen phosphorylase, muscle form
Toggle Identical (AB)Related Entries With Identical Sequence
1axr.1 | 1c8l.1 | 1e1y.1 | 1gpy.1 | 1lwn.1 | 1lwo.1 | 1pyg.1 | 1uzu.1 | 1xc7.1 | 1xkx.1 | 1xl0.1 | 1xl0.2 | 1xl1.1 | 1xl1.2 | 1z62.1 | 2amv.1 | 2amv.2 | 2amv.3 | 2f3p.1 | 2f3q.1 | 2f3s.1 | 2f3u.1 | 2fet.1 | 2fet.2 | 2fet.3 | 2ff5.1 | 2ff5.2 | 2ff5.3 | 2g9q.1 | 2g9r.1 more...less...2g9u.1 | 2g9v.1 | 2gpa.1 | 2off.1 | 2qlm.1 | 2qln.1 | 2qn1.1 | 2qn2.1 | 2qn3.1 | 2qnb.1 | 2qrg.1 | 2qrh.1 | 2qrm.1 | 2qrp.1 | 2qrq.1 | 3amv.1 | 3bcr.1 | 3bcs.1 | 3bcu.1 | 3bd6.1 | 3bd7.1 | 3bd8.1 | 3bda.1 | 3cut.1 | 3cut.2 | 3cuu.1 | 3cuu.2 | 3cuv.1 | 3cuw.1 | 3cuw.2 | 3e3l.1 | 3e3l.2 | 3e3n.1 | 3e3n.2 | 3e3n.3 | 3e3n.4 | 3e3n.5 | 3e3n.6 | 3ebo.1 | 3ebp.1 | 3g2h.1 | 3g2h.2 | 3g2i.1 | 3g2i.2 | 3g2j.1 | 3g2j.2 | 3g2k.1 | 3g2k.2 | 3g2l.1 | 3g2l.2 | 3g2n.1 | 3g2n.2 | 3mqf.1 | 3mrt.1 | 3mrv.1 | 3mrx.1 | 3ms2.1 | 3ms4.1 | 3ms7.1 | 3msc.1 | 3mt7.1 | 3mt8.1 | 3mt9.1 | 3mta.1 | 3mtb.1 | 3mtd.1 | 3np7.1 | 3np9.1 | 3npa.1 | 3s0j.1 | 3sym.1 | 3syr.1 | 3t3d.1 | 3t3e.1 | 3t3g.1 | 3t3h.1 | 3t3i.1 | 5lrc.1 | 5lre.1 | 5o50.1 | 6y5c.1 | 6y5o.1