SMTL ID : 3cuu.2 (1 other biounit)

Crystal structure of glycogen phosphorylase b in complex with N-(-D-glucopyranosyl)-N'-(2-naphthyl)oxamides

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 376: N-[(naphthalen-1-ylamino)(oxo)acetyl]-beta-D-glucopyranosylamine(Non-covalent)

376.1: 22 residues within 4Å: Chain A: E.88, N.133, G.135, L.136, L.139, N.282, D.283, N.284, F.285, R.292, H.341, H.377, T.378, A.383, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.383 Hydrogen bonds: A:L.136, A:N.284, A:N.284, A:H.377, A:H.377, A:N.484, A:N.484, A:E.672, A:S.674, A:G.675 Water bridges: A:G.135, A:A.673, A:A.673 pi-Cation interactions: A:H.341 376.2: 22 residues within 4Å: Chain B: E.88, N.133, G.135, L.136, L.139, N.282, D.283, N.284, F.285, R.292, H.341, H.377, T.378, A.383, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.383 Hydrogen bonds: B:L.136, B:N.284, B:N.284, B:H.377, B:H.377, B:H.377, B:N.484, B:N.484, B:S.674, B:G.675 Water bridges: B:G.135, B:A.673, B:A.673 pi-Cation interactions: B:H.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czifrak, K. et al., Tracking structure activity relationships of glycogen phosphorylase inhibitors: synthesis, kinetic and crystallographic evaluation of analogues of N-(-D-glucopyranosyl)-N'-oxamides. To be Published

Release Date

2009-04-21

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

Related Entries With Identical Sequence