SMTL ID : 2qln.1

Glycogen Phosphorylase b in complex with N-4-phenylbenzoyl-N'-beta-D-glucopyranosyl urea

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x F59: N-[(biphenyl-4-ylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine(Non-covalent)

F59.1: 19 residues within 4Å: Chain A: E.88, N.133, G.135, L.136, L.139, N.282, D.283, F.286, R.292, H.341, H.377, E.385, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:D.283, A:F.286, A:E.385 Hydrogen bonds: A:G.135, A:L.136, A:N.484, A:N.484, A:Y.573, A:E.672, A:A.673, A:S.674, A:G.675 Water bridges: A:G.137, A:H.377, A:T.676 pi-Cation interactions: A:R.292, A:H.341 F59.2: 19 residues within 4Å: Chain B: E.88, N.133, G.135, L.136, L.139, N.282, D.283, F.286, R.292, H.341, H.377, E.385, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:D.283, B:F.286, B:E.385 Hydrogen bonds: B:G.135, B:L.136, B:H.377, B:N.484, B:N.484, B:A.673, B:S.674, B:G.675 Water bridges: B:G.137, B:D.283, B:H.377, B:Y.573, B:T.676 pi-Cation interactions: B:R.292, B:H.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagy, V. et al., N-(4-substituted-benzoyl)-N'-(beta-D-glucopyranosyl)ureas, inhibitors of glycogen phosphorylase: synthesis, kinetic and crystallographic evaluation. To be Published

Release Date

2008-07-15

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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