SMTL ID : 2ath.1

Crystal structure of the ligand binding domain of human PPAR-gamma im complex with an agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x 3EA: 2-{5-[3-(7-PROPYL-3-TRIFLUOROMETHYLBENZO[D]ISOXAZOL-6-YLOXY)PROPOXY]INDOL-1-YL}ETHANOIC ACID(Non-covalent)

3EA.1: 20 residues within 4Å: Chain A: I.75, F.76, G.78, C.79, Q.80, R.82, S.83, H.117, I.120, Y.121, L.124, I.135, M.142, L.147, F.157, M.158, K.161, H.243, L.263, Y.267 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.76, A:R.82, A:I.120, A:Y.121, A:L.124, A:L.124, A:I.135, A:L.147 Hydrogen bonds: A:S.83, A:S.83 Salt bridges: A:H.117, A:H.243 pi-Stacking: A:H.243, A:H.243 Halogen bonds: A:I.75 3EA.2: 18 residues within 4Å: Chain B: I.75, F.76, G.78, C.79, Q.80, R.82, S.83, H.117, Y.121, L.124, I.135, M.142, L.147, M.158, K.161, H.243, L.263, Y.267 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.76, B:Y.121, B:L.124, B:I.135, B:L.147 Hydrogen bonds: B:S.83, B:Y.121, B:Y.267 Salt bridges: B:H.117, B:H.243 pi-Stacking: B:H.243, B:H.243 Halogen bonds: B:I.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahindroo, N. et al., Novel indole-based peroxisome proliferator-activated receptor agonists: design, SAR, structural biology, and biological activities. J.Med.Chem. (2005)

Release Date

2006-08-25

Peptides

Peroxisome proliferator activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator activated receptor gamma

Related Entries With Identical Sequence