SMTL ID : 6dha.1 (1 other biounit)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Hydroxy Pioglitazone (M-IV)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x GFV: Hydroxy Pioglitazone (M-IV)(Non-covalent)

GFV.1: 17 residues within 4Å: Chain A: R.74, I.75, F.76, G.78, C.79, Q.80, S.83, H.117, Y.121, L.124, V.133, I.135, M.142, M.158, H.243, L.247, Y.267 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.121, A:V.133, A:I.135 Hydrogen bonds: A:S.83, A:Y.267, A:Y.267

2 x KNA: nonanoic acid(Non-covalent)

KNA.2: 8 residues within 4Å: Chain A: L.22, R.82, M.123, L.124, L.127, I.135, S.136, E.137 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.22, A:L.22, A:M.123, A:L.127 Hydrogen bonds: A:S.136, A:E.137 Water bridges: A:G.138 Salt bridges: A:R.82 KNA.3: 2 residues within 4Å: Chain A: G.52, S.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mosure, S.A. et al., Structural Basis of Altered Potency and Efficacy Displayed by a Major in Vivo Metabolite of the Antidiabetic PPAR gamma Drug Pioglitazone. J. Med. Chem. (2019)

Release Date

2019-03-13

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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