SMTL ID : 6dh9.1 (1 other biounit)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with MSDC-0602

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x GH1: (5S)-5-({4-[2-(3-methoxyphenyl)-2-oxoethoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione(Non-covalent)

GH1.1: 16 residues within 4Å: Chain A: I.75, F.76, G.78, C.79, Q.80, S.83, H.117, Y.121, L.124, I.135, M.142, M.158, H.243, L.247, L.263, Y.267 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.75, A:Y.121, A:I.135 Hydrogen bonds: A:S.83, A:Y.267, A:Y.267

1 x KNA: nonanoic acid(Non-covalent)

KNA.2: 2 residues within 4Å: Chain A: R.74, F.81 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.74, A:F.81 Salt bridges: A:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with MSDC-0602. To Be Published

Release Date

2019-05-22

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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