SMTL ID : 2hwq.1

Structural basis for the structure-activity relationships of Peroxisome Proliferator-Activated Receptor agonists

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-tetramer

Ligands

2 x DRY: [(1-{3-[(6-BENZOYL-1-PROPYL-2-NAPHTHYL)OXY]PROPYL}-1H-INDOL-5-YL)OXY]ACETIC ACID(Non-covalent)

DRY.1: 15 residues within 4Å: Chain A: E.53, R.74, I.75, F.76, G.78, C.79, Q.80, R.82, Y.121, L.124, F.157, M.158, K.161, H.243, L.263 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.75, A:F.76, A:R.82, A:Y.121, A:L.124, A:F.157, A:F.157, A:M.158 Hydrogen bonds: A:Q.80 Water bridges: A:S.136 pi-Cation interactions: A:K.161 DRY.2: 15 residues within 4Å: Chain C: E.53, R.74, I.75, F.76, G.78, C.79, Q.80, R.82, Y.121, L.124, F.157, M.158, K.161, H.243, L.263 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:I.75, C:F.76, C:R.82, C:Y.121, C:L.124, C:F.157, C:F.157, C:M.158 Hydrogen bonds: C:Q.80 Water bridges: C:S.136 pi-Cation interactions: C:K.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahindroo, N. et al., Structural basis for the structure-activity relationships of peroxisome proliferator-activated receptor agonists. J.Med.Chem. (2006)

Release Date

2007-08-07

Peptides

Peroxisome proliferator-activated receptor gamma: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Peroxisome proliferator-activated receptor gamma

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