SMTL ID : 3noa.1

Crystal structure of human PPAR-gamma ligand binding domain complex with a potency improved agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x 5BC: (5-{3-[4-(biphenyl-4-ylcarbonyl)-2-propylphenoxy]propoxy}-1H-indol-1-yl)acetic acid(Non-covalent)

5BC.1: 23 residues within 4Å: Chain A: L.49, E.53, L.64, R.74, I.75, F.76, G.78, C.79, R.82, S.83, H.117, I.120, Y.121, L.124, V.133, I.135, M.142, F.157, M.158, K.161, H.243, L.263, Y.267 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.49, A:E.53, A:L.64, A:R.74, A:I.75, A:F.76, A:R.82, A:I.120, A:Y.121, A:L.124, A:V.133, A:I.135, A:I.135 Hydrogen bonds: A:S.83 Salt bridges: A:H.117, A:H.243 pi-Stacking: A:H.243, A:H.243 5BC.2: 21 residues within 4Å: Chain B: L.49, R.74, I.75, F.76, G.78, C.79, Q.80, R.82, S.83, H.117, I.120, Y.121, L.124, I.135, F.157, M.158, K.161, H.243, L.247, L.263, Y.267 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:L.49, B:F.76, B:R.82, B:I.120, B:Y.121, B:L.124, B:I.135, B:F.157, B:F.157 Hydrogen bonds: B:Y.121, B:Y.267 Water bridges: B:R.82 Salt bridges: B:H.117, B:H.243 pi-Stacking: B:H.243, B:H.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, Y.H. et al., Crystal structure of human PPAR-gamma ligand binding domain complex with a potency improved agonist. To be published

Release Date

2011-06-29

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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