SMTL ID : 3gbk.1

Crystal Structure of Human PPAR-gamma Ligand Binding Domain Complexed with a Potent and Selective Agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x 2PQ: 2-[(1-{3-[4-(BIPHENYL-4-YLCARBONYL)-2-PROPYLPHENOXY]PROPYL}-1,2,3,4-TETRAHYDROQUINOLIN-5-YL)OXY]-2-METHYLPROPANOIC ACID(Non-covalent)

2PQ.1: 21 residues within 4Å: Chain A: L.49, E.53, R.74, I.75, F.76, G.78, C.79, Q.80, R.82, S.83, H.117, I.120, Y.121, L.124, I.135, F.157, M.158, H.243, L.259, L.263, Y.267 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.49, A:E.53, A:F.76, A:F.76, A:Q.80, A:I.120, A:Y.121, A:L.124, A:I.135, A:F.157, A:F.157, A:L.259 Hydrogen bonds: A:S.83, A:S.83 Salt bridges: A:H.117, A:H.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, C.-H. et al., Design and structural analysis of novel pharmacophores for potent and selective peroxisome proliferator-activated receptor gamma agonists. J.Med.Chem. (2009)

Release Date

2009-12-29

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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