SMTL ID : 2hwr.1

Structural basis for the structure-activity relationships of Peroxisome Proliferator-Activated Receptor agonists

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-tetramer

Ligands

2 x DRD: 2-[(1-{3-[(6-BENZOYL-1-PROPYL-2-NAPHTHYL)OXY]PROPYL}-1H-INDOL-4-YL)OXY]-2-METHYLPROPANOIC ACID(Non-covalent)

DRD.1: 19 residues within 4Å: Chain A: L.49, E.53, R.74, F.76, G.78, C.79, Q.80, R.82, S.83, H.117, Y.121, L.124, I.135, M.142, F.157, M.158, K.161, H.243, Y.267 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.49, A:F.76, A:F.76, A:Q.80, A:R.82, A:L.124, A:I.135, A:I.135, A:F.157, A:F.157 Hydrogen bonds: A:S.83, A:S.83 Salt bridges: A:H.117, A:H.243 pi-Cation interactions: A:K.161, A:H.243 DRD.2: 19 residues within 4Å: Chain C: L.49, E.53, R.74, F.76, G.78, C.79, Q.80, R.82, S.83, H.117, Y.121, L.124, I.135, M.142, F.157, M.158, K.161, H.243, Y.267 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:L.49, C:F.76, C:F.76, C:Q.80, C:R.82, C:L.124, C:I.135, C:I.135, C:F.157, C:F.157 Hydrogen bonds: C:S.83, C:S.83, C:Y.267 Salt bridges: C:H.117, C:H.243 pi-Cation interactions: C:K.161, C:H.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahindroo, N. et al., Structural basis for the structure-activity relationships of peroxisome proliferator-activated receptor agonists. J.Med.Chem. (2006)

Release Date

2007-08-07

Peptides

Peroxisome proliferator-activated receptor gamma: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Peroxisome proliferator-activated receptor gamma

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