SMTL ID : 2g0h.1

Structure-based drug design of a novel family of PPAR partial agonists: virtual screening, x-ray crystallography and in vitro/in vivo biological activities

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SP3: N-[1-(4-FLUOROPHENYL)-3-(2-THIENYL)-1H-PYRAZOL-5-YL]-3,5-BIS(TRIFLUOROMETHYL)BENZENESULFONAMIDE(Non-covalent)

SP3.1: 19 residues within 4Å: Chain A: F.76, C.79, Q.80, R.82, S.83, I.120, Y.121, L.124, V.133, I.135, F.154, F.157, M.158, K.161, H.243, L.247, L.259, L.263, Y.267 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.76, A:L.124, A:F.157, A:F.157, A:F.157, A:L.247 Hydrogen bonds: A:S.83, A:S.83, A:K.161 pi-Stacking: A:H.243 SP3.2: 20 residues within 4Å: Chain B: I.75, F.76, C.79, Q.80, R.82, S.83, I.120, Y.121, L.124, V.133, I.135, L.147, L.150, F.154, F.157, M.158, K.161, H.243, L.247, L.263 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.75, B:Q.80, B:L.124, B:L.124, B:L.147, B:F.157, B:L.247 Hydrogen bonds: B:Y.121, B:K.161 pi-Stacking: B:F.76, B:F.157 Halogen bonds: B:C.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, I.L. et al., Structure-Based Drug Design of a Novel Family of PPARgamma Partial Agonists: Virtual Screening, X-ray Crystallography, and in Vitro/in Vivo Biological Activities. J.Med.Chem. (2006)

Release Date

2006-05-16

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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