SMTL ID : 5ugm.2 (1 other biounit)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Edaglitazone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x 8A7: (5R)-5-({4-[2-(5-methyl-2-phenyl-1,3-oxazol-4-yl)ethoxy]-1-benzothiophen-7-yl}methyl)-1,3-thiazolidine-2,4-dione(Non-covalent)

8A7.1: 20 residues within 4Å: Chain A: F.58, I.75, F.76, G.78, C.79, R.82, S.83, H.117, Y.121, L.124, I.135, S.136, M.142, F.157, M.158, K.161, H.243, L.263, Y.267 Ligands: KNA.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.58, A:R.82, A:Y.121, A:L.124, A:I.135 Hydrogen bonds: A:S.83, A:Y.267 Water bridges: A:S.136 8A7.2: 11 residues within 4Å: Chain A: I.61, P.63, L.64, Q.65, Q.77, Q.80, F.81, S.258, L.259, H.260, P.261 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.63, A:Q.77, A:F.81 Hydrogen bonds: A:Q.65 pi-Cation interactions: A:H.260

1 x KNA: nonanoic acid(Non-covalent)

KNA.3: 8 residues within 4Å: Chain A: E.53, F.58, K.59, H.60, R.74, Q.77, G.78 Ligands: 8A7.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.58, A:F.58, A:R.74, A:Q.77 Hydrogen bonds: A:K.59, A:H.60 Salt bridges: A:H.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife (2018)

Release Date

2018-01-17

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor gamma

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