SMTL ID : 2az8.1

HIV-1 Protease NL4-3 in complex with inhibitor, TL-3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 3TL: benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate(Non-covalent)

3TL.1: 17 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, M.46, I.47, G.48, G.49, I.50, I.84 Chain B: R.8, D.25, I.50, P.81, V.82, I.84 Ligands: 3TL.2 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.50, A:I.84, B:I.50, B:P.81, B:V.82 Hydrogen bonds: A:G.27, A:D.29, A:D.29, A:G.48, A:G.48, B:D.25 Water bridges: A:I.50, A:I.50, A:I.50 3TL.2: 17 residues within 4Å: Chain A: R.8, D.25, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, M.46, I.47, G.48, G.49, I.50, I.84 Ligands: 3TL.1 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:I.50, B:I.84, A:I.50, A:P.81, A:V.82 Hydrogen bonds: B:G.27, B:D.29, B:D.29, B:D.29, B:G.48, B:G.48, A:D.25 Water bridges: B:I.50, B:I.50, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heaslet, H. et al., Structural Insights into the Mechanisms of Drug Resistance in HIV-1 Protease NL4-3. J.Mol.Biol. (2006)

Release Date

2006-02-28

Peptides

PROTEASE RETROPEPSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEASE RETROPEPSIN

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