SMTL ID : 7m9r.1

HIV-1 Protease WT (NL4-3) in Complex with LR4-44

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

1 x YUP: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-1-(3,5-difluorophenyl)-3-hydroxy-4-[{4-[(1S)-1-hydroxyethyl]benzene-1-sulfonyl}(2-methylpropyl)amino]butan-2-yl}carbamate(Non-covalent)

YUP.1: 31 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 24 PLIP interactions: 10 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:L.23, B:I.84, A:L.23, A:A.28, A:V.32, A:I.47, A:L.76, A:P.81, A:I.84 Hydrogen bonds: B:G.27, B:G.27, B:D.29, B:D.30, B:D.30, A:D.25, A:D.29, A:D.30, A:D.30, A:D.30 Water bridges: B:D.29, B:I.50, A:I.50 Salt bridges: B:D.25, A:D.25

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain B: R.8 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.8 Salt bridges: B:R.8 SO4.3: 2 residues within 4Å: Chain B: K.7, R.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8, B:R.8 Water bridges: A:R.87 SO4.4: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.18, B:N.37, B:N.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease WT (NL4-3) in Complex with LR4-44. To Be Published

Release Date

2022-04-06

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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