SMTL ID : 6pji.1

HIV-1 Protease NL4-3 WT in Complex with LR3-43

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

1 x OO4: methyl [(1S)-1-cyclopropyl-2-({(2S,3S,5S)-5-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-1,6-diphenylhexan-2-yl}amino)-2-oxoethyl]carbamate(Non-covalent)

OO4.1: 30 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 20 PLIP interactions: 11 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, B:I.47, B:I.50, B:P.81, B:V.82 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, A:G.48, B:G.27, B:D.29, B:D.30 Water bridges: A:I.50, B:R.8, B:I.50

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain B: Q.18, K.20, M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37 Salt bridges: B:K.20 SO4.3: 3 residues within 4Å: Chain B: G.68, H.69, K.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rusere, L.N. et al., Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere. J.Med.Chem. (2020)

Release Date

2020-07-01

Peptides

Protease NL4-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease NL4-3

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