SMTL ID : 7m9q.1

HIV-1 Protease WT (NL4-3) in Complex with LR4-33

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.7, R.8, L.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.8 Water bridges: A:R.8 SO4.3: 3 residues within 4Å: Chain B: K.7, R.8, L.10 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:R.87, B:R.8 Hydrogen bonds: B:R.8 SO4.4: 3 residues within 4Å: Chain B: K.20, E.21, N.83 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.21, B:E.21, B:N.83 Water bridges: B:K.20, B:K.20 Salt bridges: B:K.20 SO4.5: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 SO4.6: 1 residues within 4Å: Chain B: R.8 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.8 Water bridges: A:D.29

1 x YUM: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-[{4-[(1S)-1-hydroxyethyl]benzene-1-sulfonyl}(2-methylpropyl)amino]-1-{4-[(2-methyl-1,3-thiazol-4-yl)methoxy]phenyl}butan-2-yl]carbamate(Non-covalent)

YUM.2: 32 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, F.53, P.81, V.82, I.84 25 PLIP interactions: 14 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:I.47, A:L.76, A:P.81, A:V.82, A:I.84, B:L.23, B:V.82 Hydrogen bonds: A:D.25, A:D.29, A:D.30, A:D.30, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:R.8, B:D.29, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease WT (NL4-3) in Complex with LR4-33. To Be Published

Release Date

2022-04-06

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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