- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.54 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x ASN- LEU- LEU- GLN- LYS- LYS: Random peptide(Non-covalent)
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 6 residues within 4Å:- Chain A: R.87, N.88, T.91
- Chain B: L.5, W.6
- Ligands: DMS.3
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.87, A:R.87
DMS.3: 5 residues within 4Å:- Chain A: G.73, T.74, N.88
- Ligands: DMS.2, GOL.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.74, A:T.74, A:N.88
DMS.9: 6 residues within 4Å:- Chain B: E.35, K.55, V.56, R.57, V.77, G.78
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.57
- Salt bridges: B:E.35
DMS.10: 5 residues within 4Å:- Chain A: G.94, T.96
- Chain B: Q.2, T.4
- Ligands: GOL.6
No protein-ligand interaction detected (PLIP)- 1 x ACT: ACETATE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: I.15, G.16, P.39, I.62, L.63
- Ligands: ACT.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.16, A:L.63, A:L.63
GOL.6: 4 residues within 4Å:- Chain A: Q.92, I.93, G.94
- Ligands: DMS.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.92
GOL.7: 2 residues within 4Å:- Chain A: P.1, Q.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.2
GOL.8: 4 residues within 4Å:- Chain A: K.43, Q.58, D.60
- Ligands: DMS.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.43, A:K.43, A:Q.58
GOL.12: 4 residues within 4Å:- Chain A: W.6
- Chain B: R.87, N.88, T.91
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.87, B:R.87, B:T.91, B:T.91
GOL.13: 6 residues within 4Å:- Chain B: D.29, D.30, Q.58, T.74, N.88
- Ligands: ASN-LEU-LEU-GLN-LYS-LYS.1
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:D.30, B:T.74, B:N.88
- Water bridges: B:T.31, B:Q.58, B:Q.58, B:Q.58, B:Q.58, B:T.74
GOL.14: 6 residues within 4Å:- Chain B: R.41, W.42, K.43, Q.58, Y.59, D.60
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.58, B:D.60, B:D.60
- Water bridges: B:R.41, B:W.42
GOL.15: 7 residues within 4Å:- Chain A: T.4, L.5, W.6
- Chain B: T.91, G.94, C.95, T.96
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.5
GOL.16: 7 residues within 4Å:- Chain B: I.15, G.16, L.38, P.39, I.62, L.63
- Ligands: GOL.17
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.16, B:L.63
GOL.17: 8 residues within 4Å:- Chain B: K.14, G.16, G.17, L.63, I.64, E.65, K.70
- Ligands: GOL.16
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:K.14, B:G.17, B:L.63, B:E.65, B:K.70, B:K.70
- Water bridges: B:A.71
- 1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Perryman, A.L. et al., Fragment-based screen against HIV protease. Chem.Biol.Drug Des. (2010)
- Release Date
- 2012-05-30
- Peptides
- Protease: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
SMTL ID : 4e43.1
HIV protease (PR) dimer with acetate in exo site and peptide in active site
Protease
Toggle Identical (AB)Related Entries With Identical Sequence
2az8.1 | 2hb4.1 | 2pc0.1 | 3kf0.1 | 3kf1.1 | 3kfn.1 | 3kfp.1 | 3kfr.1 | 3kfs.1 | 4ejd.1 | 4ejk.1 | 4tvg.1 | 4tvh.1 | 5vck.1 | 5vea.1 | 6dgx.1 | 6dgy.1 | 6dgz.1 | 6ops.1 | 6oxo.1 | 6oxp.1 | 6oxq.1 | 6oxr.1 | 6oxs.1 | 6oxt.1 | 6oxu.1 | 6oxv.1 | 6oxw.1 | 6oxx.1 | 6oxy.1 more...less...6oxz.1 | 6oy0.1 | 6oy1.1 | 6oy2.1 | 6pjb.1 | 6pjc.1 | 6pjc.2 | 6pjd.1 | 6pje.1 | 6pjf.1 | 6pjg.1 | 6pjh.1 | 6pji.1 | 6pjk.1 | 6pjl.1 | 6pjm.1 | 6pjn.1 | 6pjo.1 | 6w6t.1 | 7ldy.1 | 7ldz.1 | 7le0.1 | 7le1.1 | 7le2.1 | 7le3.1 | 7le4.1 | 7le5.1 | 7le6.1 | 7le7.1 | 7le8.1 | 7le9.1 | 7lea.1 | 7leb.1 | 7lec.1 | 7led.1 | 7lee.1 | 7lef.1 | 7leg.1 | 7leh.1 | 7lei.1 | 7m9j.1 | 7m9k.1 | 7m9l.1 | 7m9m.1 | 7m9q.1 | 7m9r.1 | 7m9s.1 | 7m9t.1 | 7m9u.1