SMTL ID : 7m9s.1

HIV-1 Protease WT (NL4-3) in Complex with NR01-141

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.19, K.20, E.21, N.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.21, A:N.83 Water bridges: A:K.20, A:E.34 SO4.3: 3 residues within 4Å: Chain B: K.7, R.8, L.10 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.8 Water bridges: B:R.8 Salt bridges: B:R.8 SO4.4: 2 residues within 4Å: Chain B: M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 SO4.5: 3 residues within 4Å: Chain B: G.68, H.69, K.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.70 SO4.6: 2 residues within 4Å: Chain B: P.1, H.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.1 Salt bridges: B:H.69

1 x YUJ: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(1S)-1-hydroxy-2,3-dihydro-1H-indene-5-sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate(Non-covalent)

YUJ.2: 31 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 22 PLIP interactions: 12 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:I.47, A:P.81, A:V.82, A:I.84, B:L.23, B:I.84 Hydrogen bonds: A:D.29, A:D.30, A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30 Salt bridges: A:D.25, B:D.25 Water bridges: B:D.29, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease WT (NL4-3) in Complex with NR01-141. To Be Published

Release Date

2022-08-31

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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