SMTL ID : 6w6t.1

WT HIV-1 Protease in Complex with Phosphonated UMass6 (PU6)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.35, M.36, N.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.35, A:N.37 SO4.2: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18 SO4.3: 3 residues within 4Å: Chain B: G.68, H.69, K.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.70

1 x TK7: diethyl [(4-{(2S,3R)-4-{[(4-aminophenyl)sulfonyl](2-ethylbutyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate(Non-covalent)

TK7.4: 33 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, F.53, T.80, P.81, V.82, I.84 24 PLIP interactions: 13 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:I.84, B:L.23, B:F.53, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:R.8, A:D.25, A:D.30, A:D.30, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:D.30, A:I.50, A:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., To Be Determined. To Be Published

Release Date

2021-03-17

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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