SMTL ID : 2bnq.1

Structural and kinetic basis for heightened immunogenicity of T cell vaccines

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x SER- LEU- LEU- MET- TRP- ILE- THR- GLN- VAL: SYNTHETIC PEPTIDE(Non-covalent)

SER-LEU-LEU-MET-TRP-ILE-THR-GLN-VAL.1: 39 residues within 4Å: Chain A: M.5, Y.7, F.9, M.45, E.63, K.66, V.67, H.70, T.73, V.76, D.77, T.80, L.81, Y.84, R.97, Y.99, Y.116, T.143, K.146, W.147, V.152, L.156, Y.159, W.167, Y.171 Chain C: Y.30, R.92, P.93, T.94, S.95, G.96, G.97, Y.99 Chain D: N.26, E.28, Y.93, V.94, G.95, N.96 43 PLIP interactions: 32 interactions with chain A, 4 interactions with chain D, 7 interactions with chain C Hydrophobic interactions: A:Y.7, A:F.9, A:K.66, A:K.66, A:V.67, A:T.73, A:D.77, A:L.81, A:Y.99, A:Y.116, A:T.143, A:W.147, A:V.152, A:Y.159, D:V.94, C:Y.30, C:Y.30 Hydrogen bonds: A:Y.7, A:E.63, A:K.66, A:D.77, A:Y.84, A:R.97, A:Y.99, A:Y.99, A:Y.171, A:Y.171, D:V.94, D:N.96, C:Y.99 Water bridges: A:D.77, A:D.77, A:R.97, A:R.97, A:R.97, A:K.146, A:K.146, D:N.96, C:T.94 Salt bridges: A:K.146 pi-Stacking: C:Y.30, C:Y.30, C:Y.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J.-L. et al., Structural and Kinetic Basis for Heightened Immunogenicity of T Cell Vaccines. J.Exp.Med. (2005)

Release Date

2005-05-23

Peptides

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN: A
BETA-2-MICROGLOBULIN: B
T-CELL RECEPTOR ALPHA CHAIN V REGION: C
T-CELL RECEPTOR BETA CHAIN C REGION: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN

BETA-2-MICROGLOBULIN

T-CELL RECEPTOR ALPHA CHAIN V REGION

T-CELL RECEPTOR BETA CHAIN C REGION

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