SMTL ID : 2bvp.1

Structures of Three HIV-1 HLA-B5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Non-Progression

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- SER- PRO- ARG- THR- LEU- ASP- ALA- TRP: HIV-P24(Non-covalent)

ILE-SER-PRO-ARG-THR-LEU-ASP-ALA-TRP.1: 27 residues within 4Å: Chain A: M.5, Y.7, Y.9, G.62, E.63, N.66, M.67, A.69, S.70, T.73, N.77, I.80, Y.84, I.95, Y.99, Y.116, A.117, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:A.69, A:N.77, A:I.80, A:I.95, A:I.95, A:I.95, A:Y.99, A:Y.99, A:Y.116, A:W.147, A:Q.155, A:L.156, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:E.63, A:N.66, A:N.77, A:N.77, A:Y.84, A:K.146, A:Q.155, A:Y.171, A:Y.171 Water bridges: A:Y.7, A:E.63, A:E.63, A:N.66, A:N.66, A:Y.74, A:Y.74, A:Y.74, A:Y.99, A:W.147 Salt bridges: A:E.63 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart-Jones, G.B. et al., Structures of three HIV-1 HLA-B*5703-peptide complexes and identification of related HLAs potentially associated with long-term nonprogression. J Immunol. (2005)

Release Date

2005-09-07

Peptides

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN

BETA-2-MICROGLOBULIN

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