SMTL ID : 2g9k.1

Human Transthyretin (TTR) Complexed with Hydroxylated polychlorinated Biphenyl-4-hydroxy-2',3,3',4',5-Pentachlorobiphenyl

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x NE1: 2',3,3',4',5-PENTACHLOROBIPHENYL-4-OL(Non-covalent)

NE1.1: 14 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: NE1.3 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:L.17, A:A.108 Halogen bonds: A:S.117, C:S.117 Water bridges: C:S.117, C:S.117, C:S.117, C:S.117 NE1.2: 15 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: NE1.4 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.17, B:A.108 Halogen bonds: B:T.119 NE1.3: 14 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, A.109, L.110, S.117, T.119 Ligands: NE1.1 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain C Water bridges: A:S.117, A:S.117, A:S.117, A:S.117 Halogen bonds: A:S.117, C:S.117 Hydrophobic interactions: C:L.17, C:A.108 NE1.4: 15 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: NE1.2 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.17, D:A.108 Halogen bonds: D:T.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Purkey, H.E. et al., Hydroxylated polychlorinated biphenyls selectively bind transthyretin in blood and inhibit amyloidogenesis: rationalizing rodent PCB toxicity. Chem.Biol. (2004)

Release Date

2006-03-14

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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