SMTL ID : 2vlj.1

The Structural Dynamics and Energetics of an Immunodominant T-cell Receptor are Programmed by its Vbeta Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GLY- ILE- LEU- GLY- PHE- VAL- PHE- THR- LEU: FLU MATRIX PEPTIDE(Non-covalent)

GLY-ILE-LEU-GLY-PHE-VAL-PHE-THR-LEU.1: 35 residues within 4Å: Chain A: M.5, Y.7, E.63, K.66, V.67, A.69, H.70, T.73, V.76, D.77, L.81, Y.84, R.97, Y.99, H.114, Y.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 Chain C: S.94, Q.95, G.96 Chain D: D.32, Q.52, I.53, R.98, S.99, S.100 33 PLIP interactions: 26 interactions with chain A, 6 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: A:Y.7, A:K.66, A:V.76, A:L.81, A:Y.99, A:Y.116, A:Y.123, A:T.143, A:W.147, A:V.152, A:Q.155, A:Y.159, A:Y.159, D:Q.52, D:I.53 Hydrogen bonds: A:Y.7, A:E.63, A:D.77, A:Y.84, A:Y.99, A:Y.99, A:K.146, A:K.146, A:Y.159, A:Y.171, D:Q.52, D:Q.52, D:S.99, C:S.94 Water bridges: A:D.77, A:T.80, A:Y.116, D:D.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishizuka, J. et al., The Structural Dynamics and Energetics of an Immunodominant T-Cell Receptor are Programmed by its Vbeta Domain. Immunity (2008)

Release Date

2008-01-22

Peptides

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B
JM22 TCR ALPHA CHAIN: C
JM22 TCR BETA CHAIN: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN

BETA-2-MICROGLOBULIN

JM22 TCR ALPHA CHAIN

JM22 TCR BETA CHAIN

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