- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.1: 5 residues within 4Å:- Chain A: K.70, E.72, H.90, E.92
- Chain B: W.41
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Water bridges: A:K.70, A:K.70, B:K.35
- Salt bridges: A:K.70, A:H.90, B:K.35, B:K.70
SO4.3: 6 residues within 4Å:- Chain A: W.41, K.70
- Chain B: K.70, E.72, H.90, E.92
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B- Water bridges: A:W.41, A:W.41, A:K.70, B:K.70
- Salt bridges: A:K.35, A:K.70, B:K.70, B:H.90
SO4.6: 5 residues within 4Å:- Chain C: K.70, E.72, H.90, E.92
- Chain D: W.41
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain D- Water bridges: C:K.70, C:K.70, D:K.35
- Salt bridges: C:K.70, C:H.90, D:K.35, D:K.70
SO4.8: 6 residues within 4Å:- Chain C: W.41, K.70
- Chain D: K.70, E.72, H.90, E.92
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain D- Water bridges: C:W.41, C:W.41, C:K.70, D:K.70
- Salt bridges: C:K.35, C:K.70, D:K.70, D:H.90
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: R.103, V.122
- Chain B: Y.114
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Water bridges: A:S.100
- Hydrogen bonds: B:Y.114
GOL.4: 8 residues within 4Å:- Chain B: A.108, A.109, L.110, S.117
- Chain D: L.17, A.108, L.110
- Ligands: GOL.9
2 PLIP interactions:2 interactions with chain D- Water bridges: D:A.108, D:S.117
GOL.5: 5 residues within 4Å:- Chain B: I.26, N.27, Y.78, A.81, L.82
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.27
- Water bridges: B:I.26
GOL.7: 3 residues within 4Å:- Chain C: R.103, V.122
- Chain D: Y.114
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Water bridges: C:S.100
- Hydrogen bonds: D:Y.114
GOL.9: 8 residues within 4Å:- Chain B: L.17, A.108, L.110
- Chain D: A.108, A.109, L.110, S.117
- Ligands: GOL.4
2 PLIP interactions:2 interactions with chain B- Water bridges: B:A.108, B:S.117
GOL.10: 5 residues within 4Å:- Chain D: I.26, N.27, Y.78, A.81, L.82
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.27
- Water bridges: D:I.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miyata, M. et al., Role of the Glutamic Acid 54 Residue in Transthyretin Stability and Thyroxine Binding. Biochemistry (2009)
- Release Date
- 2009-12-22
- Peptides
- Transthyretin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
SMTL ID : 3a4d.1
Crystal structure of Human Transthyretin (wild-type)
Transthyretin
Toggle Identical (AC) Toggle Identical (BD)Related Entries With Identical Sequence
1bm7.1 | 1bmz.1 | 1bmz.2 | 1e3f.1 | 1e4h.1 | 1e5a.1 | 1f41.1 | 1ict.1 | 1ict.2 | 1tt6.1 | 1tta.1 | 1tyr.1 | 1tyr.2 | 1tz8.1 | 1tz8.2 | 1tz8.3 | 1u21.1 | 1y1d.1 | 1z7j.1 | 2b15.1 | 2b77.1 | 2b9a.1 | 2f7i.1 | 2f8i.1 | 2f8i.2 | 2fbr.1 | 2flm.1 | 2g4g.1 | 2g5u.1 | 2g9k.1 more...less...2gab.1 | 2h4e.1 | 2qgb.1 | 2qgc.1 | 2qgd.1 | 2qge.1 | 2rox.1 | 2roy.1 | 3b56.1 | 3bsz.1 | 3cbr.1 | 3cn0.1 | 3cn0.2 | 3cn1.1 | 3cn1.2 | 3cn2.1 | 3cn2.2 | 3cn3.1 | 3cn3.2 | 3cn4.1 | 3cn4.2 | 3d2t.1 | 3d7p.1 | 3esn.1 | 3eso.1 | 3esp.1 | 3glz.1 | 3glz.2 | 3gs0.1 | 3gs0.2 | 3gs4.1 | 3gs4.2 | 3gs7.1 | 3gs7.2 | 3hj0.1 | 3imr.1 | 3ims.1 | 3imt.1 | 3imu.1 | 3imv.1 | 3imw.1 | 3ipb.1 | 3ipe.1 | 3kgu.1 | 3m1o.1 | 3p3r.1 | 3p3s.1 | 3p3t.1 | 3p3u.1 | 3tct.1 | 3w3b.1 | 4ac4.1 | 4act.1 | 4fi6.1 | 4fi7.1 | 4fi8.1 | 4hjt.1 | 4hju.1 | 4i85.1 | 4iiz.1 | 4ik6.1 | 4ik7.1 | 4iki.1 | 4ikj.1 | 4ikk.1 | 4ikl.1 | 4ky2.1 | 4l1s.1 | 4l1t.1 | 4mas.1 | 4mrb.1 | 4pm1.1 | 4qxv.1 | 4tq8.1 | 4tqh.1 | 4tqi.1 | 4tqp.1 | 4wnj.1 | 4wns.1 | 4wo0.1 | 5aks.1 | 5akt.1 | 5akv.1 | 5al0.1 | 5al8.1 | 5boj.1 | 5e23.1 | 5en3.1 | 5hjg.1 | 5ihh.1 | 5jid.1 | 5jim.1 | 5jiq.1 | 5l4f.1 | 5l4i.1 | 5l4j.1 | 5l4m.1 | 5tzl.1 | 6gr7.1 | 6grp.1 | 7qc5.1 | 7z60.1 | 8ade.1 | 8c85.1 | 8c86.1 | 8pm9.1