SMTL ID : 3bsz.1

Crystal structure of the transthyretin-retinol binding protein-Fab complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.38 Å

Oligo State

hetero-4-2-2-2-mer

Ligands

2 x RTL: RETINOL(Non-covalent)

RTL.1: 14 residues within 4Å: Chain B: G.83 Chain E: L.35, F.36, L.37, A.43, A.57, V.61, M.73, M.88, L.97, Q.98, H.104, Q.117, F.135 10 PLIP interactions: 9 interactions with chain E, 1 interactions with chain B Hydrophobic interactions: E:F.36, E:L.37, E:L.37, E:A.43, E:A.57, E:Q.98, E:F.135, E:F.135 Hydrogen bonds: E:Q.98, B:G.83 RTL.2: 14 residues within 4Å: Chain D: G.83 Chain F: L.35, F.36, L.37, A.43, F.45, A.55, M.73, M.88, Y.90, Q.98, H.104, Q.117, F.135 12 PLIP interactions: 11 interactions with chain F, 1 interactions with chain D Hydrophobic interactions: F:F.36, F:L.37, F:L.37, F:A.43, F:F.45, F:A.55, F:Y.90, F:Q.98, F:F.135, F:F.135 Hydrogen bonds: F:Q.98, D:G.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zanotti, G. et al., Structural and mutational analyses of protein-protein interactions between transthyretin and retinol-binding protein. Febs J. (2008)

Release Date

2008-11-11

Peptides

Transthyretin: ABCD
Plasma retinol-binding protein: EF
Fab fragment heavy chain: GI
Fab fragment light chain: HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
L

I
M

H
H

J
N

Transthyretin

Plasma retinol-binding protein

Fab fragment heavy chain

Fab fragment light chain

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