SMTL ID : 3c1k.1

Crystal structure of thrombin in complex with inhibitor 15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-oligomer

Ligands

1 x T15: 2-{3-[(BENZYLSULFONYL)AMINO]-6-METHYL-2-OXOPYRIDIN-1(2H)-YL}-N-({1-[2-(TERT-BUTYLAMINO)-2-OXOETHYL]-4-METHYL-1H-IMIDAZOL-5-YL}METHYL)ACETAMIDE(Non-covalent)

T15.1: 18 residues within 4Å: Chain A: H.72, Y.76, E.123, N.124, L.125, E.175, I.208, A.229, C.230, E.231, S.234, V.254, S.255, W.256, G.257, E.258, G.259, C.260 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.76, A:L.125, A:L.125, A:E.175, A:I.208, A:E.231, A:V.254, A:W.256 Hydrogen bonds: A:E.231, A:S.255, A:G.257 Water bridges: A:A.229, A:G.257, A:G.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isaacs, R.C. et al., Structure-based design of novel groups for use in the P1 position of thrombin inhibitor scaffolds. Part 2: N-acetamidoimidazoles. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-03-18

Peptides

Prothrombin: A
Hirugen: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Prothrombin

Hirugen

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