SMTL ID : 3fdm.1 (1 other biounit)

alpha/beta foldamer in complex with Bcl-xL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-2-2-mer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: E.41, A.42, E.45, Y.144, N.147 Chain C: R.16 Ligands: EDO.4 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Water bridges: A:E.41, A:E.45 Hydrogen bonds: C:R.16, C:R.16 EDO.2: 3 residues within 4Å: Chain A: A.117, W.118, T.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.121 EDO.3: 4 residues within 4Å: Chain A: V.101, D.105 Chain B: K.25, Y.27 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:D.105 Hydrogen bonds: B:Y.27 EDO.4: 5 residues within 4Å: Chain A: E.45, R.49, N.147 Chain C: R.16 Ligands: EDO.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:E.45, A:R.49, A:N.147, C:R.16 EDO.5: 3 residues within 4Å: Chain A: D.44, E.47, L.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.44, A:E.47 EDO.6: 6 residues within 4Å: Chain A: R.51, F.54, L.57, S.94, F.95, A.98 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.54, A:T.58 EDO.7: 3 residues within 4Å: Chain A: Q.37, D.44 Chain B: Y.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.37, A:D.44 Water bridges: A:R.40, A:D.44 EDO.8: 5 residues within 4Å: Chain B: L.143, Y.144, G.145, N.146 Chain D: R.16 5 PLIP interactions: 2 interactions with chain D, 3 interactions with chain B Hydrogen bonds: D:R.16, D:R.16, B:G.145 Water bridges: B:E.45, B:N.146 EDO.9: 6 residues within 4Å: Chain B: S.23, G.26, Y.27, S.28, A.34, N.146 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.146 Water bridges: B:N.146 EDO.10: 4 residues within 4Å: Chain A: Q.109, V.112 Chain B: S.28, W.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.28 EDO.11: 3 residues within 4Å: Chain A: W.29 Chain B: V.112, S.113 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.29 Water bridges: B:S.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, E.F. et al., High-Resolution Structural Characterization of a Helical alpha/beta-Peptide Foldamer Bound to the Anti-Apoptotic Protein Bcl-x(L). Angew.Chem.Int.Ed.Engl. (2009)

Release Date

2009-03-10

Peptides

Apoptosis regulator Bcl-X: AB
alpha/beta-peptide foldamer: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

Apoptosis regulator Bcl-X

alpha/beta-peptide foldamer

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