SMTL ID : 4tuh.1 (3 other biounits)

Bcl-xL in complex with inhibitor (Compound 10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 38H: 2-[8-(1,3-benzothiazol-2-ylcarbamoyl)-3,4-dihydroisoquinolin-2(1H)-yl]-5-{3-[4-(1H-pyrazolo[3,4-d]pyrimidin-1-yl)phenoxy]propyl}-1,3-thiazole-4-carboxylic acid(Non-covalent)

38H.1: 21 residues within 4Å: Chain A: A.42, E.45, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, L.143, Y.144 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.46, A:Y.50, A:R.51, A:F.54, A:F.54, A:L.57, A:T.58, A:L.79, A:A.98, A:Y.144 Hydrogen bonds: A:S.55, A:L.57, A:N.85, A:R.88 Water bridges: A:G.87 Salt bridges: A:R.88 38H.9: 21 residues within 4Å: Chain B: A.42, E.45, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, L.143, Y.144 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.46, B:Y.50, B:F.54, B:F.54, B:L.57, B:T.58, B:L.79, B:A.98, B:Y.144, B:Y.144 Hydrogen bonds: B:S.55, B:L.57, B:N.85, B:R.88 Salt bridges: B:R.88

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.133, N.134 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: Q.31, M.32, D.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.138 Water bridges: A:M.32, A:D.138 EDO.4: 2 residues within 4Å: Chain A: Q.132, E.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.132 Water bridges: A:G.135 EDO.5: 4 residues within 4Å: Chain A: W.130, E.133, N.134 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.134 EDO.6: 4 residues within 4Å: Chain A: N.85, W.86, W.130, Y.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.86, A:Y.144, A:Y.144 Water bridges: A:W.86 EDO.7: 5 residues within 4Å: Chain A: N.77, F.80, V.84, Y.122, H.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.77, A:H.126 EDO.8: 3 residues within 4Å: Chain A: W.29 Chain B: V.112, S.113 1 PLIP interactions: 1 interactions with chain B Water bridges: B:V.112

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 3 residues within 4Å: Chain A: A.116, A.117 Chain B: R.11 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.11 Hydrophobic interactions: A:A.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koehler, M.F. et al., Structure-Guided Rescaffolding of Selective Antagonists of BCL-XL. Acs Med.Chem.Lett. (2014)

Release Date

2014-10-15

Peptides

Bcl-2-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bcl-2-like protein 1

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