SMTL ID : 6uvg.5 (5 other biounits)

Crystal structure of BCL-XL bound to compound 13: (R)-2-(3-([1,1'-Biphenyl]-4-carbonyl)-3-(4-methylbenzyl)ureido)-3-(((3R,5R,7R)-adamantan-1-ylmethyl)sulfonyl)propanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x QHP: (R)-2-(3-([1,1'-Biphenyl]-4-carbonyl)-3-(4-methylbenzyl)ureido)-3-(((3R,5R,7R)-adamantan-1-ylmethyl)sulfonyl)propanoic acid(Non-covalent)

QHP.1: 9 residues within 4Å: Chain A: A.42, F.46, Y.50, A.53, N.85, G.87, R.88, V.90, A.91 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.46, A:F.46, A:Y.50, A:A.53, A:R.88, A:V.90 Hydrogen bonds: A:N.85 QHP.2: 16 residues within 4Å: Chain B: A.42, E.45, F.46, Y.50, A.53, F.54, L.57, N.85, W.86, G.87, R.88, V.90, A.91, F.140, L.143, Y.144 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.42, B:F.46, B:F.46, B:F.46, B:F.46, B:Y.50, B:A.53, B:L.57, B:W.86, B:V.90, B:A.91, B:F.140, B:Y.144, B:Y.144 Hydrogen bonds: B:N.85

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.51 Chain B: K.25 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.51, A:R.51 Salt bridges: B:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roy, M.J. et al., Structure-Guided Development of Potent Benzoylurea Inhibitors of BCL-X L and BCL-2. J.Med.Chem. (2021)

Release Date

2021-05-05

Peptides

Bcl-2-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

Bcl-2-like protein 1

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