SMTL ID : 6uvh.2 (1 other biounit)

Crystal structure of BCL-XL bound to compound 15: (R)-2-(3-(2-((4'-Chloro-[1,1'-biphenyl]-2-yl)methyl)-1,2,3,4-tetrahydroisoquinoline-6-carbonyl)-3-(4-methylbenzyl)ureido)-3-((cyclohexylmethyl)sulfonyl)propanoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x QHJ: (R)-2-(3-(2-((4'-Chloro-[1,1'-biphenyl]-2-yl)methyl)-1,2,3,4-tetrahydroisoquinoline-6-carbonyl)-3-(4-methylbenzyl)ureido)-3-((cyclohexylmethyl)sulfonyl)propanoic acid(Non-covalent)

QHJ.1: 19 residues within 4Å: Chain A: A.42, E.45, F.46, Y.50, A.53, F.54, V.75, E.78, L.79, N.85, W.86, G.87, R.88, V.90, A.91, F.95, F.140, L.143, Y.144 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.42, A:E.45, A:F.46, A:F.46, A:F.46, A:Y.50, A:V.75, A:E.78, A:L.79, A:W.86, A:R.88, A:V.90, A:F.95, A:F.140, A:L.143, A:Y.144 Hydrogen bonds: A:Y.50, A:N.85 pi-Stacking: A:F.46, A:Y.50 QHJ.3: 18 residues within 4Å: Chain B: A.42, E.45, F.46, R.49, Y.50, A.53, F.54, L.57, E.78, L.79, N.85, W.86, G.87, R.88, A.91, F.95, F.140, Y.144 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:A.42, B:F.46, B:Y.50, B:Y.50, B:L.57, B:E.78, B:L.79, B:W.86, B:A.91, B:F.95, B:F.140, B:F.140, B:Y.144 Hydrogen bonds: B:N.85

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain B: E.107, M.108, Q.109, V.110 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.109, B:V.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roy, M.J. et al., Structure-Guided Development of Potent Benzoylurea Inhibitors of BCL-X L and BCL-2. J.Med.Chem. (2021)

Release Date

2021-05-05

Peptides

Bcl-2-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Bcl-2-like protein 1

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