SMTL ID : 4tuh.3 (3 other biounits)

Bcl-xL in complex with inhibitor (Compound 10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 38H: 2-[8-(1,3-benzothiazol-2-ylcarbamoyl)-3,4-dihydroisoquinolin-2(1H)-yl]-5-{3-[4-(1H-pyrazolo[3,4-d]pyrimidin-1-yl)phenoxy]propyl}-1,3-thiazole-4-carboxylic acid(Non-covalent)

38H.1: 21 residues within 4Å: Chain A: A.42, E.45, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, L.143, Y.144 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.46, A:Y.50, A:F.54, A:F.54, A:L.57, A:T.58, A:L.79, A:F.95, A:A.98, A:Y.144, A:Y.144 Hydrogen bonds: A:S.55, A:L.57, A:N.85 Water bridges: A:R.88, A:R.88, A:R.88, A:R.88 Salt bridges: A:R.88 pi-Stacking: A:F.95 38H.2: 21 residues within 4Å: Chain B: A.42, E.45, F.46, R.49, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, Y.144 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:E.45, B:F.46, B:Y.50, B:F.54, B:F.54, B:L.57, B:T.58, B:L.79, B:F.95, B:A.98 Hydrogen bonds: B:S.55, B:L.57, B:N.85 Water bridges: B:R.88, B:R.88, B:R.88, B:R.88 Salt bridges: B:R.88

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: S.113 Chain B: W.29 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:W.29 Water bridges: A:S.113, A:S.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koehler, M.F. et al., Structure-Guided Rescaffolding of Selective Antagonists of BCL-XL. Acs Med.Chem.Lett. (2014)

Release Date

2014-10-15

Peptides

Bcl-2-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Bcl-2-like protein 1

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