SMTL ID : 4tuh.4 (3 other biounits)

Bcl-xL in complex with inhibitor (Compound 10)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 38H: 2-[8-(1,3-benzothiazol-2-ylcarbamoyl)-3,4-dihydroisoquinolin-2(1H)-yl]-5-{3-[4-(1H-pyrazolo[3,4-d]pyrimidin-1-yl)phenoxy]propyl}-1,3-thiazole-4-carboxylic acid(Non-covalent)

38H.1: 21 residues within 4Å: Chain A: A.42, E.45, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, L.143, Y.144 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:E.45, A:F.46, A:Y.50, A:F.54, A:F.54, A:L.57, A:T.58, A:L.79, A:A.98, A:Y.144, A:Y.144 Hydrogen bonds: A:S.55, A:L.57, A:N.85, A:R.88 Water bridges: A:R.88 Salt bridges: A:R.88 pi-Stacking: A:F.95 pi-Cation interactions: A:R.51 38H.3: 21 residues within 4Å: Chain B: A.42, E.45, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, L.143, Y.144 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.46, B:F.46, B:Y.50, B:F.54, B:F.54, B:L.57, B:T.58, B:L.79, B:A.98, B:Y.144 Hydrogen bonds: B:S.55, B:L.57, B:N.85 Water bridges: B:R.88, B:R.88, B:R.88 Salt bridges: B:R.88 pi-Stacking: B:Y.144

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.11, V.15, W.29 Chain B: E.12 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.12, A:R.11, A:R.11 Water bridges: A:S.30 EDO.4: 4 residues within 4Å: Chain B: N.77, F.80, Y.122, H.126 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.77 Water bridges: B:H.126 EDO.5: 3 residues within 4Å: Chain B: S.30, Q.31, M.32 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.30, B:Q.31, B:M.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koehler, M.F. et al., Structure-Guided Rescaffolding of Selective Antagonists of BCL-XL. Acs Med.Chem.Lett. (2014)

Release Date

2014-10-15

Peptides

Bcl-2-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Bcl-2-like protein 1

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