SMTL ID : 7jgv.1

CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH COMPOUND 1620116, CRYSTAL FORM 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x V9S: 6-[(8E)-8-{2-[4-(benzylcarbamoyl)-1,3-thiazol-2-yl]hydrazinylidene}-5,6,7,8-tetrahydronaphthalen-2-yl]-3-(2-phenylethoxy)pyridine-2-carboxylic acid(Non-covalent)

V9S.1: 19 residues within 4Å: Chain A: A.42, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98, Y.144 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.46, A:F.46, A:Y.50, A:Y.50, A:F.54, A:F.54, A:L.79, A:A.91, A:Y.144 Hydrogen bonds: A:R.51, A:S.55, A:D.56, A:L.57, A:N.85, A:N.85 Water bridges: A:R.88, A:R.88 Salt bridges: A:R.88 pi-Stacking: A:Y.50 pi-Cation interactions: A:R.51 V9S.2: 18 residues within 4Å: Chain B: A.42, F.46, Y.50, R.51, F.54, S.55, D.56, L.57, T.58, E.78, L.79, N.85, G.87, R.88, A.91, S.94, F.95, A.98 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:F.46, B:F.46, B:F.46, B:Y.50, B:R.51, B:F.54, B:F.54, B:F.54, B:L.57, B:E.78, B:L.79, B:A.91 Hydrogen bonds: B:R.51, B:S.55, B:D.56, B:L.57, B:N.85 Water bridges: B:R.88, B:R.88, B:R.88, B:R.88 Salt bridges: B:R.88 pi-Cation interactions: B:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, W. et al., Optimization of Benzothiazole and Thiazole Hydrazones as Inhibitors of Schistosome BCL-2. Acs Infect Dis. (2021)

Release Date

2021-02-24

Peptides

Bcl-2-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bcl-2-like protein 1

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